DreINT0136739 @ danRer10
Intron Retention
Gene
ENSDARG00000042899 | si:ch211-163l21.8
Description
si:ch211-163l21.8 [Source:ZFIN;Acc:ZDB-GENE-041008-93]
Coordinates
chr8:23781265-23782150:+
Coord C1 exon
chr8:23781265-23781415
Coord A exon
chr8:23781416-23782056
Coord C2 exon
chr8:23782057-23782150
Length
641 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
3' ss Seq
TCAAAACGTTTTACACTCAGGAG
3' ss Score
4.62
Exon sequences
Seq C1 exon
AGCAGGGCTGTTGCATCCTGTGTGGAGAATGTGACTGAAAGCAAGAGGGAGGTGAAAGGATATATCTGTCAGTCCACGGTAGTACCTTCTGAGATCAGGGGTCAAAGTGTTGTGTCCTCTCAGCCCTTCAGTATTGGAGACACTTTAATCG
Seq A exon
GTGAGTGCTGCTGATGCGTTTACACTTAAGTTCCAATAAATTTACTTGTAACATTAGATTGATGAACAACAGTGAGGAAAATAACATCGCCTCAGTGTACCCAGTTTTTAAAAACGCTTGATTGATAGTTTACAGTTGAATGCTACCATTACTCATGCAAAGCAGTAGTGAAACCATGTGGATACCTTTTGCTGTAACAAATTCGTTGGACGTCATTATTAGTTTCGGTGTTTTCTGGTTCAATGTTGACACCTTGTGGACAAATCGAGTAGTACAAATCTCTTTTAAGTGGTAGTTAACCCGGGGACTGAATATTCTGTCATTTACTCACCCTTGTGTTACTTGTTACAAACTTCTTTGACTTTTTTCTGATACATGTCATCACAAACCGTAAATATTGTCACAAATCTCAACATTTGTAACAGCATACAGTGTACATTTAAATGGAAATTAATCTGAAAATTGACTTACTGTTTACCCTCAAGTGGTTTCAAACCATTTTGAGTTTCTCTGTTCTGTTAAATATAAAAGATGATATTCTGAAGAAAACTGGAAACCAGTAACCTTTGACTTTCATTGTATTTGTTGTATCTACTAAACCTACAAACTTATTTATCAAATTCAAAACGTTTTACACTCAG
Seq C2 exon
GAGTGACTACCGAGTCCAAACTTGATGACATTTCATCATTTGTTGACAACTTTCCTGTTGAATCAGACCTGCCTGATGTTATTTTTTACTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042899:ENSDART00000137820:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF053256=DUF730=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGGCTGTTGCATCCTGTG
R:
AAATAACATCAGGCAGGTCTGA
Band lengths:
233-874
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]