MmuINT0032000 @ mm10
Intron Retention
Gene
ENSMUSG00000008845 | Cd163
Description
CD163 antigen [Source:MGI Symbol;Acc:MGI:2135946]
Coordinates
chr6:124320355-124325572:+
Coord C1 exon
chr6:124320355-124320678
Coord A exon
chr6:124320679-124325260
Coord C2 exon
chr6:124325261-124325572
Length
4582 bp
Sequences
Splice sites
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
3' ss Seq
GTTTGTTTGTTTGTTTTCAGACA
3' ss Score
9.17
Exon sequences
Seq C1 exon
AGTTCATGTCTCTGAGGCTGACCAACGAAGCCCACAAAGAAAACTGCACAGGTCGCCTTGAAGTGTTTTACAATGGTACATGGGGCAGTATTGGCAGTAGCAATATGTCTCCAACCACTGTGGGGGTGGTGTGCCGTCAGCTGGGCTGTGCAGACAACGGGACTGTGAAACCCATACCTTCAGACAAGACACCATCCAGGCCCATGTGGGTAGATCGTGTGCAGTGTCCAAAAGGAGTTGACACTTTGTGGCAGTGCCCCTCGTCACCTTGGAAACAGAGACAGGCCAGCCCCTCCTCCCAGGAGTCCTGGATCATCTGTGACA
Seq A exon
GTGAGTATCCATTTTCAACAGGAAATTTCCATTCTACTCACAACCCCCACTCTGACTGGTTTTCTGTCTCTGGTGTTTAGCTGTGGCCCTAATTTTTAGTCTTTTACCTATTCATCAAGATCATATATTAATAGTGACATTACAATAAGATACCTCATAAACTTTAAGATGTTCCAGGGCTTTATAAATGAAAACATTTTAAAAGCTGTTTTTAAATTTCAGGTTTTTTTTTAATTTTCTGTAAAGCTTTCTTTAAAGAAGCTTAAAATCTCTCAACTGTCTTGTTTTTTGCAATATCAAAATAAAGCACCTTTAATTAAGAGTGAAGACAGAGAGTATAACCATAATTTTTACAAGGCAAAAACAAGTTTTAACAATATAAGCTATTTATTGTTTCCAAAATCAATATCAAGTGGCTTCCTTTTATGTTATAAAGTTTAGCTGCCCAGAAGAAAAGTTATCGTATATGAATATATGAAGGTGCAACTTAATTACCTCTTACTTATTTTTTTTTAAACTAGTTTTTAAGACAGGGTAGAAATTATTTAAAAATCCTGTCCCAATTTAAAAGTGTCTTTGAATACCTGTCCCCCTGGTTGAGCTCATGCCATGTGTTGCTGCCCAGAACGGCTCCAACCCTGAGTTATGAGTTTTCAGTTAACTTTTTGTTACAAATGTTACAGATTTTCAACCATACCCAATAACTACAACCAAGATACAGAACATAGTAGTCTCCTACATTTCAGAGCAGGCAGAAACAAACACGATGTGACCACATACATTATACATTTAAAACAGACAAAAATTTCCTTACTTCCTCCAGCTGTTAATTTCAAAAGAGGAGCACTTTGCTACCTGCCGAGTCCAATTCTCATGGGCGCAGTGGTTCTGTAGCGGGAGTAGCCACTGGCTTCCTGACCGGAGAAAGCTGAGGAGTTGCTGGTGCCACTTTAAGAGCGGCTTGTACAGATGCCAACCACCCACACACACCACCCCCAGCTTCGTTGTCAGCTTGATCCAGGGGAAGAAGGTGGGACTATGCCTGCAGTGCTCAGCTCCCTGCTGCGGGTGCAGGGCTCCAAGAGCAGTATCAGTTTAATCAGTTTTTGTTGTCCCGATTCAGCCTCTTTTTCTGACAATCCTTGAGATGGGTTAAGCCTAAGTCAGCAGATGAAGTATGGCCCTTTTTTTTTTCCGAATATGAAACAGAGCAACAATCAAGCTAACCGAAACTATAGACACAAACTGACAGACATGGACAATCTGTCATGCCCACAACCAGAACCAAATGTTACCCCAATGGAAACCAGTATGGGACAGGATGTCTTAGGTCTATTTCTGACCCTATGTCCACTTTCTCCTTTCTTGGATCCCAGACAGGTTCCCACCAGAAACCAGAATACAGATATAAGCTTACTTCCGGTTAGTGTTTGGCCAGAACGTTACGACGTTTTTAAGCTCCAAAACCACAAACATCTGTGTCAAGTTATCCCACCAATCAGGATTTAGGGATAGGGTACTTCCTTAGGAATGGGTCTTTGTGGTTCCCGTCGGTTGGACTATTTAACTCTGGCAACTTGCCTAGCATTCATGTCTCAACTTGTCAATCATGTCAGTTACCCACATACATGTATCTTCTGCCAAGCAGGATGGCAGTTACTCAGGAAGGCCTTGGGAACTTAAACTTTATTTGACCCCTATTCAAAATGGAAGTTTTATTCAAAATGGCTTCAGTTTTGTTCCTTCTTGCCTTGCTTTCTGAGAAAGCATGAGATTTTATTTCCCTGTTCAAACTCTAGCTTGATTTGTTAGGTCTCATTAGGCAGTGATGGGTAACTTCCAGATATACTCAGGAATGGAATAGTTGGTTTTATGTAATTGTTATATGTATATATGCACATACCAGATCAGTAATCATTATTCCAGATCTTTGTATTCATGTACTTGAAAGTTCTATTTGATTGATTTCTCTAAGAAAATCAAGAAACAGAGAATAACTGGTTGATAAAAGGCCTACTTTCCTTTCTCTACATTTCTTCCAAATATTTAACCTTGCTACACTGGTATAAGACAAAACTCAGAATGGTCAATCCTGGACTCTTTTCATTATGCATCTCCTTAACCTAGGAAGATGATATTTCTGTCCACATCACTTTTGTCCATGTGAGGAAATTTAACTTTCCACATGAGTCATGTCAACTTCATTCACCTGCAGTTTCTTGAGTCACACTATGATTCTTTTAAAACAGTATCTTTAATAGTTCTTTGAAAACTTCATGCTGTGTGTTTTGATCATATCCTCCCCCCTCTCTCAACTCCTACAAGATCCACCCCTACCCCTCTATGTACTCAACTTTGTCTCCTCTTGTATTTTTATATCTCAGTAAGCCCAGTTTGTGCTGCCCAGATACTCATGGGTGTGTGTTCGACCTTGAAGCTTGGTCTTACTAGGGTCTATACCCTTTAAGACAATGATCATCCCTCTCCCAGAAACTATCGGTGACTGATAGCTCCTCAGTTGGGGTGAGACTTCACACCCACCATCCTTCTCCATGTTGGAATTGTTGTCTGGCTAGAGCTTGCACAGGACTGGTGCATGCTGTCACAAATGCTGAGCTCACATGTGCAAGTATCCTGTTGTGTCTAGAATATACTGTCTCCTTGTAGTCGCCTACCATGTCTGGATCTTACAATCTTTCCACCCCATCTTTGGCAAAAAAAAAAAAAAAAAATTCCTGAGCCTTGACAGAGGGGTAAATGATAGACATTCTATTTAAATCTTAGAAGCATGGCATCTGTTATTCTCTGAATACTGACAAGTTGCAGTTACCCTCCCCATACTCTTTCCTCTACCCTTCACTCCCATTTCACACCCCATTTAACCCTTCCCTTTCCATTATTCCGGTTTGCCCGTGTATATCACTGCATTCTATCCCCCCTCTCCATGGTCTCATCTTATTCTCCTGACCTCGATGGGTTTCCCAAATGAAATACACATGCCCAAAGACTCAAAGCTAGAACTCACAGACGAGACAAAGCATTTGTGTGGCATTTGTCTGTGTGGGTTGTCAGCTCACACAGGATGATTGTTTCAGGTTTCTTCTATTCGTGTGAAATGGTCGGAATTTCATTTTTCTTAACAGCTGAAGAATATCCCAGTGTGTAAGTGTACCGTTTTTTCATTTTCTACTCATCAAGTGGTGGACATATAGGTTGGTTCTATTTCCTGGTTATTGTGACTAGAGTAGCAATGATCATGGATGACCAAATGTCTTTATAAGATATAAGGGGCCTTTGGGCATATGCCCAAAAGTGGTATAGCTATATCATCTGGTAGATCGATTTCTAGCCTGTTGAGGAATGTCCACATTGATGTTCATGGTGTCTGTACCAATTTGCTCTCCTACCAGCAGTGGAAAAAAAAATTCTCCTCTTCCCTAAACCCACACCAGCTTCTGCTGTCTTTTGCTTATTTTTCACTTTAGCTGTTCTGACTGGAATAGAATAAAATCTTAATGTAGTTTTTATTTGCATTTCCCTAATGACTTGGGATGTTAAATCTTTTCAAAAATATTTCTCAGCTATTTGTGTTCCATCCTTTAAGAATTATTTGTTTCATCCCTTGCCCTGTTTTTTAATTGGGTCATTTGTTTTCTTGACATTAATTTTCTGAGTTCTTTCTGTGCTCTAGATACTAGCCCCTTGTCAGGTTTATAGGTGGTAAAGATTGTTTCCTATGCTTCAGGCCCCATTTTCACCATAATAATGATGTACTTTGTTGTACAGAAGTTTTCTGTTTCGTATGGTCAGTCCCATTTGTCAAGTGTTTGATGAAATACAGCCAGTTTGATAAAAGGACATATATATTTATAAAAGAGGAATTTTTATGAATAGTGTTATTTTTAAACCCTGCATTAGTTTGTATATATTTTATTAATTCTTGGAGAGTTTCATACATGCACACAGTATATTTGGATTATATTCATCCCCTCCACTCCTCCTCCAACTCCTCTCAGATCCAGCTCCTCAACTCCCCTTCCAACTTCATGTCCTCTTTATTGTCTTTCTTCACAAACCACTGAGTCCAGTCTGCTACCCATAGACTCATGGGTGTAGGTCCATCTACTGAAACAAGATCAACCTACCAGGGATCACATCCCCAAAGAAAAGTGACTCAACGGCCTCCAAGAGCTGTCAGCTGCCAGTTCTTCCTCTCCCTGCTCCACACTGTAATGTTGACTGGCTTGATGTGCTGCAGGTAGCCACAGCTGCTATGGATGCAGTGGTCCTGCCATGTCCAGAAAAGATTGCTTTGCCTCGGTCTTTCTCAACCTCTGAGCCTTACAATCTTTCCACCTTTCCTGCCACGATGGTCCCCGAGCCTTAGAAGAGAGGAGTGTACTGTAGATGTCTCATTTATGGCTGTTACTCTCTACACTTTGTCCAGTGCACATTAAATAGTTTTTAAAGCACTCAAGTCTCTCTGTTTTATAGTCTTTCAGAAGCTTTTAGTTCCTCAGGAATAAGCCATATGCCTCTGTTGTTTATTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTTCAG
Seq C2 exon
ACAAAATAAGACTCCAGGAAGGGCATACAGACTGTTCTGGACGTGTGGAGATCTGGCACAAAGGTTCCTGGGGAACAGTGTGTGATGACTCCTGGGATCTTAATGATGCTAAGGTTGTATGTAAGCAGTTGGGCTGTGGCCAAGCTGTGAAGGCACTAAAAGAAGCAGCATTTGGTCCAGGAACTGGGCCCATATGGCTCAATGAAATTAAGTGTAGAGGGAATGAGTCTTCCCTGTGGGATTGTCCTGCCAAACCGTGGAGTCACAGCGACTGTGGGCACAAAGAAGATGCTTCCATCCAGTGCCTCCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000008845:ENSMUST00000032234:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.092 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=89.9)
A:
NA
C2:
PF0053013=SRCR=WD(100=93.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types