MmuINT0032915 @ mm10
Intron Retention
Gene
ENSMUSG00000024769 | Cdc42bpg
Description
CDC42 binding protein kinase gamma (DMPK-like) [Source:MGI Symbol;Acc:MGI:2652845]
Coordinates
chr19:6317375-6317685:+
Coord C1 exon
chr19:6317375-6317514
Coord A exon
chr19:6317515-6317603
Coord C2 exon
chr19:6317604-6317685
Length
89 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
3' ss Seq
GTGTCCTTTGTACCTCCCAGGGA
3' ss Score
8.3
Exon sequences
Seq C1 exon
GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAAG
Seq A exon
GTAGGTCCCAGACAGTGACACGGGACAAGTCATGGGTAGTGAGGAGTTCATTCAGGGGCGGTATCTCATGTGTCCTTTGTACCTCCCAG
Seq C2 exon
GGACCCCCAGTTCTCAGCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024769:ENSMUST00000025681:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(38.7=100)
A:
NA
C2:
PF0016924=PH=FE(22.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACGCCGCTCTCAGTGACTC
R:
TGAAGATACGTGGCAGGTCCT
Band lengths:
178-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types