RnoINT0032689 @ rn6
Intron Retention
Gene
ENSRNOG00000027456 | Cdc42bpg
Description
CDC42 binding protein kinase gamma [Source:RGD Symbol;Acc:1307260]
Coordinates
chr1:221684630-221684945:+
Coord C1 exon
chr1:221684630-221684769
Coord A exon
chr1:221684770-221684863
Coord C2 exon
chr1:221684864-221684945
Length
94 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
GTGTCCTTTGTACCTCCTAGGGA
3' ss Score
8.47
Exon sequences
Seq C1 exon
GTGCCTCGGCCTTCAGGTGTCCGTCGGGGTTGGCAGAGGGTGTATGCTGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGACGCTCCTGACCCTCGAGGCAGCATGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTGAG
Seq A exon
GTAAGTGCCAGGCAGTGACACAGGACGAGTCATGGGTATTGAGAAGTTCATTCAGGAGTCGTATGGTATCTCATGTGTCCTTTGTACCTCCTAG
Seq C2 exon
GGATCCCCAGTTCTCAGCCACCCCTGTCTTAGCTCCAGATGTCATCCATGCCCAATCCAAGGACCTGCCACGCATCTTTAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027456:ENSRNOT00000038016:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(38.7=100)
A:
NA
C2:
PF0016924=PH=FE(22.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGTGTATGCTGCTCTCAGT
R:
CAGGTCCTTGGATTGGGCATG
Band lengths:
171-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]