MmuINT0034153 @ mm9
Intron Retention
Gene
ENSMUSG00000023433 | Cela3b
Description
chymotrypsin-like elastase family, member 3B [Source:MGI Symbol;Acc:MGI:1915118]
Coordinates
chr4:136980701-136981053:-
Coord C1 exon
chr4:136980956-136981053
Coord A exon
chr4:136980836-136980955
Coord C2 exon
chr4:136980701-136980835
Length
120 bp
Sequences
Splice sites
5' ss Seq
CTCGTGAGT
5' ss Score
8.41
3' ss Seq
TGACCTCCACTCTTCCGCAGGAC
3' ss Score
10.27
Exon sequences
Seq C1 exon
GTCTCCCTTCAGTATGAGAAGGATGGGAGCTTCCACCATACCTGTGGTGGCTCCCTCATTACCCCTGACTGGGTTCTGACTGCGGGCCACTGCATCTC
Seq A exon
GTGAGTTCCACCCCCTATGCCTGTCCCACTCACTATCCCTGCATGTGTCCTGGGCAGCTGGAACAATAGGAGAGGAGTGAGGTTGGCTCCAGGCTTATACTGACCTCCACTCTTCCGCAG
Seq C2 exon
GACTTCTCGCACCTACCAGGTTGTACTTGGGGAGCATGAACGTGGTGTGGAGGAAGGCCAAGAACAGGTGATCCCCATCAACGCTGGAGACCTCTTTGTGCACCCCAAGTGGAACTCTATGTGTGTGAGCTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023433-Cela3b:NM_026419:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.087
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(13.6=100)
A:
NA
C2:
PF0008921=Trypsin=FE(19.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAGTATGAGAAGGATGGGAGCT
R:
CCACAGCTCACACACATAGAGT
Band lengths:
226-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: