MmuINT0036218 @ mm10
Intron Retention
Gene
ENSMUSG00000022041 | Chrna2
Description
cholinergic receptor, nicotinic, alpha polypeptide 2 (neuronal) [Source:MGI Symbol;Acc:MGI:87886]
Coordinates
chr14:66143921-66146515:+
Coord C1 exon
chr14:66143921-66143965
Coord A exon
chr14:66143966-66146405
Coord C2 exon
chr14:66146406-66146515
Length
2440 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
GTGACCACTCCCCTGAGCAGGAA
3' ss Score
4.77
Exon sequences
Seq C1 exon
GATGAGAAGAATCAAATGATGACCACCAATGTCTGGCTAAAGCAG
Seq A exon
GTGAGTCTTCCATAGTAGGAATTGGCAGACTTGTGCAGTCTCCAGACCCTTCTAGGACCCTCATTATCTATCGGCAAGATGCTAAATTCATGGGTCATGATCAGTAGTCACCTAAGAGGTGAGGCAGCTGTGGTACTGCAGGCTGCTCTCTCCGGGGGCTGGCTTTTGTTTGGCCAGTCTCTTACTCAACTGTTCTTTTCACCCACAGCACCAAGGGATGCCTTTCTAGGAACAAGCATCTCATAGTCCCAGGTTTACAAGACAGCTCACTGAATCGGCTCCCTTCATCATAGGACAAGGGGGTACCCAGGTATGCCCAGCTCCAAGGTCCATCTCCTAGGAGTGGCTTAGAGTCTGTGCTACCTGGCAAATGACCCCAGAGCTCACAAGCATAAAGCAATGACCCATTTATCACACATTTGTGGTCTGGTGGTCAGATGGCTTTCTCTGCTTCAAATGGTGACTAAGGTACTTGGCGGCACCTGGCCAGCTGTGGTTAGTGTGTTACTGTCTAAAATGGCTTCCCTTACATCAGCAGTTTTCAATCTCTGGGTCACAGCCTGTTGGCAAACCTCTATCTCCAAAAATATTTACATTATTCTCATAACAGTAGCAAAAGTACAGTTATGAAATAGCAATGACATAGCTTTCTGCTCGGGGGTCATCACAGCACGAGGAACTGTATTAAAGCACTGCAGCATTAGGAAGGTTGAGGGCCACTGCCTTACATGTCTGTCTTTTACATGGATATTTGGAAAGCTCTGGAAGATTCTGAAAGGCTGGGGTCCTCCATGCGCACTCTCAGGTTCCTTCACTAGGGTCTCTTTGGCAGTTGATTTGATGGATTCTCACTTGGTGTCTTCAAGTCTCCCTGAGTGACAAGAGACAGAAAGTAGAAGCTGAAAGCCACTTATGGATCTATAGCAATCTAGCCTCCATCTTACTTCATTCTATAGGCACAGTCAGTAAAGAATCTAGAGTCGGGAAGAGACAAAGATACCATTTCTCCATGGAAGGAGAGTGTGTGTGGAGTTCTGGGATGGGCCACTGTTGGGCAGGCTCATTCTGTCATCCCAGAAAATCCCAAGGCCTTAAAGTGGAGATGACAAAGGGACATGGGAAAGGAAAGCTAACCCCTGCCCTCAGCTTTCTACTCTGGCCCCTTGGGTACCTGACTGGCCCTGACTCAGAGGCCAGCAGGCAGAAACCCACCAAGGCAATGCCATTTCAGAGTCTTTCAAATAGGTTCCTTGCTCACTGTAGGGGTTCTACACACAACCCCCGACTCACTGGGTTCTGGATGCGTGATAGCTACTTGGGTCAGGGGCTGCTCTGAGCCAATTGCTTCTGCTATTGCTTATTCTGGAGTCATTGGAGGGTCTGAGCCTCATCTCTATGGATGAACCAATGGGAACCAGAGTGAGGGGGAAGCTTTAAAAGGTGTGTGCAGTCATGTCATGGGGGGTGGTGTGGTCCTAGATCCTCGATCACCACGATTGTCCTGGTCACTCATGCCAGGGTTGTGGAGGAGGAGAGGAAAGGGCACAGTGGTGGAACCAGGCCTTCTGCAGCTGCCCAGGACTAGCCTGAAATGCTGGAGAAGTTATTAACCCTCTGGAAGCTCCTTTCTCCCCATCTGTGAAGGGGTGGCTCATCTGTCTTAGACCTATGGCCGTCAGATGCCCCCATTTGATGTAAGTGTCCCCAAATATATGAACCTGAAATCCTAAAGGATATACCAGAGAGGGAATAAGAGCTCGGTATTGGGAACTAAAGGGTAAAGCTCCGTTTCATACAGTGCTTGCCTGGGTTTGACTCCCCAACACCGCAGGCACTGGGCATGGGGCTCATGAACTCCATCCAGAGCCTGGGAAGAGGGGCTGAGAAGAAGCAAATGTTTAAGGTCGTTTTTTACCTTTACAGTAAGTTGGAGGCCAGCTTGTGCATGAAACAAACAAATAAACAATAACAAAATCTGGTTTTAAAATGCACTTGGACCTGCTCTGGTGGAACACAGTTGGGACCTAGAGCATCCTCTTCCTGCTGGGACTCCCTGGATCAGGAGGTCTCCAGAGCATAGTTGGAAGGTCATGGGTAACTCTCCTGGCTGTCTCTGGCAAGCCCTGCCTGGAGAAGGAGTGACTGCATAACAGATTCACTAAGTGGGGAGCATCAGAACAAGGGCCAGAGGCACAGCTAGAGGGCCAAGTGTGCTGGCACTGGCTGCCTGGGATTTTCACTACCAGAGTCGGAACAAAATGGGCTGCTTATCAGAAATGGTTTGCCCTATTCCCATAGCAGCCTTTTCCTCGTGCCATAGACTCTGTGGATTCTGTGGGGGCTAGGAGAGGGACACAGGGGTGCTACAGTCCCACAGCTCCTCAGATCACCTAAAGGTCCCGGTGGGGCAGTGCTCTGATGTGACCACTCCCCTGAGCAG
Seq C2 exon
GAATGGAATGACTACAAGCTGCGCTGGGACCCGGCTGAGTTTGGCAACATCACCTCCCTCCGCGTCCCCTCAGAGATGATCTGGATCCCAGACATTGTTCTCTACAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022041:ENSMUST00000022620:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=FE(6.8=100)
A:
NA
C2:
PF0293118=Neur_chan_LBD=FE(17.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types