MmuINT0036765 @ mm9
Intron Retention
Gene
ENSMUSG00000033392 | Clasp2
Description
CLIP associating protein 2 [Source:MGI Symbol;Acc:MGI:1923749]
Coordinates
chr9:113801515-113805903:+
Coord C1 exon
chr9:113801515-113801593
Coord A exon
chr9:113801594-113805759
Coord C2 exon
chr9:113805760-113805903
Length
4166 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
TATTGTGCCTTCTTCAACAGGTA
3' ss Score
10.56
Exon sequences
Seq C1 exon
AGAGTCTTTTCCAAATGATCTTCAGTTTAATATCCTAATGAGATTTACAGTTGACCAGACCCAAACGCCAAGCTTGAAG
Seq A exon
GTAAATCTTTGATTTCTTCTGAAAATATTGCAACGAACTGAAGTATTTTATTATAAAGTTAGGATAATATTTACATTTTTGTCACAGAAGAAACTGCTCGATCAGTGGGTTTTGTTTTTATAAACTTTCAGATAGTTGCGCCAGCACTGCGGGACCAGCTTCACTCTTTTTGGAGCTCAAAGGTTTTCTTTGGTTCTTATTTTAGCCTGCATTATTTCTTCTCATAACTCTCTGCAGCGTTTCCCATAACGTTGTATGCATTGATGTCAGTACTAACCTTCCTAAGTCTTGTACACATGCACATACTTGATTTCAAATGTTCCCCAGAGGCTTCACCCAGCCTTCGGAAAAGCTTTCTGGGTAACCACATTTTAAAAGCATCAAAAAATATGGCCATCTAACCCTATGCTGGCAAAACAGTTACTTTTTAAAATCTTCTTTAATCTTATGTTTGTGATTTCCAAGTCTTTTTTTCTCTTAGTTATAGTTTTTGGAGACTGATAAATTATTTGGGCCACACATAGCATTGCCTAGATGCTTAGTGACATACATACAGACATACATACATACATGTATACACACACACACACACACACACACACACACACACACACACACGTATGTATGTATGTCCTGGGATATGGTTTAATTGATGGAGTGCTTGCCTAGCATGCACACAGCCCTACCAAAATGTTTTTCATGAGCTGGTCCATTGAGATTAGAGTCAGGAGATGGGGAGCTCACTGCTGGTACAGGCCTTGGGGTTTCTGCTTTGTTCTGCACAGATGTGCTCTACAAGCCTCACACCCCAGGATCAATTTTCCCTTTACATCTTGGGATGCAGTTATGCCTCTGAATCACAATTATGTTTCTAATAAGGGTGACAAGCACCCAACGCAGTGGCATTTTCTCAGAGCCACTATATAAAAGGGACCTTCTGGGTGTTTTGTTGTTGTTGTTTTGAAAAGTGACATGCAGAATAAGGTTTTATTTAATACTAATGCATATTGTAGCTCATACTATATCCAAGGCATTTCTGGAAATAGAAAACATAGACTCTTTTATCATTATTACCTATAATACTTGATTAACTAAATGGTAATAAAGGATTTCATATAGTTATCTGGTTATTCAGTAGCTGCTGAAAATATAAGGGAAGGAGTTTTGTAAATGAAGCCTGAAGCAATCTTTAGAAACAGATGTCAGGTGGAGTGGTGTAGGCTTGCGATCCTGCCACAGGAGGCACTGAGGCAGGTAGATCATCAGTTATTTATCAGTATGGGCTACACAGAGTTCCAGGATACCTGAGCTGTGAAGCATGACTCAAGAGACAGACGATAGGAGGGGCAGACTAAACTTGAAAAACTAAAGAAAAAGACAAGGAAAGAGAAAAATAGGGATGTGGGAAGCTGGTGAGGGGAAAAGGAGCTTCCTGTGGGCCTGGAATCAGATGCTTTGTAAAGTGCTGTGAAGTGCGTGTAAGTCCAGTGAGCAGCAAAGCTATGGGAGCCATCTTTGTTACACGTTTAGACAACAGGAATAAGTTACACTGCTGTCATACTTCATGCCCAGGTGAGAACCTCATGAAGGTGGCTGACAGGATTAATTATAAAGAACTTGGTCAAGGTGGAAGTGCTGAAGAGCTGGCTCAGCACTTAACATTCAGGGGACTGGAGTTGGTCTTCCAGTAGCCAAGTCAGGAAGTTCCCAAAAGCCTGAACTTCAGCTTAAGGGATCCACTGTCCTCGTCCACACCTGCACATACGAGGCATACATTCACACAGACCCACATGCATACATGCAGATAAAAACTTGTTTAAGCCATAAGAAGGTAAAGAGATGGAAGGATGGCTTAGTAGTTCAGAGCAATCGTCTCACAACCATAGCAACCAGAGCTTGGATCTGAGCAGCCAGTAACAAGCTGAGCAACTGCTTAATTAAAAAGCTCCAAGGAATCCAGTACCCTTCCTCTTTTGGCCTGCACACACACACACACACACACACGCACACACACACACACACACACACACACACACACACACACACGCGCGCACGCGCACACGCACACACACACACACGCACACACACACACACACACACGCACACACACACACACACACACGCACACACACACACGCACACACACACACGCACACACGAGCACATATATTCACATAGAAGCACATATACAAAATGCTGTCAAGTTTTTACCAGGTTACTGAGTGTGGTGCGCATACACCTTTAATTCCAGCACTCAGGAGGCAGAGGCCAGGAACCAGCTTGCTCTATGTAACAAGTTTCAAAAGAGCAAGGACTACATACAGAAACCCTGTCTCCAGCTAATAATAATGGTGGTAAATATAAAATTAGAAATAAGTTAAAGAAGTAAATCTTTTTTAAAGAAAGAAAATAGCAGTAGACTAAATAACAATGCAGGGTGATTTAAATTTTAATTAAATTAACGTGTATTTGTTAAATGCATGTGATTTTTTTCTGAATACTTTTTCCAGATCGACAAATATGCTGAAATAGTACATAAACCTTTGCAACTACATTATTTTGTTCTTTGAAATGGAATGTATAGTTGCACAATTAGTTACAGATTGCATGACTTTGTGAGATGTCCTACTAAAATGGGAATGTTGCAATGGTTATGTTTCTGTGGTTGCTTCCTTATTATAGTTAACACCACTTTTTTGTGGAAACTTTCTAAAACTGCAGTACTTGCATTGCATGATTATAAATGTCTTTAATCTCAGCACTTCAGAAGCAGAGGTAAATGGATCTCTGTGAGTTCAATGCCAGCGTGGCCTACACAGAGTTCCAAACACCAGGGCTACATATAGTGAGACTCTGACCTCCATAATCTCATACACAAACCTACCCATACATGTAAACACACATTCATATACATAGCACACAGTTAAAGAAAAAAAAATTTAAAGATCATTTAAAGTCCTGTGGATGTTCCAGTGCCCGAGTGCTTGCCTGACATTAGCAAGGCAATAGTAGATTTAATGTGCAGCAAGGCAAATAGTGATAGTAATAACAACTTTTAAAACTAACGGACCTCAGAGACAGAAGAGGACCTAGGCTCAGTTCCCAGCATGTACATGGCAGCACACAGCCTCCACAACTACAATCCCAAGGGATCTGACTGTCTTCTGGTGTCCATGAGCACCAGGTATTCATATGGTGCATACATGGAGGGAAATGCTCATACACATAAGAGTAATCCATAAAGATAATTGCAGCACTCGGGAGGCAGAGGCAGGCATGTGTCTGAGTTCTAGGCCAGCCTAGTGTGCAAAATAAGTTCCAGGGCAGCCGGGACTACACAAAGAAACCCTGTCTTAGATAAACAAAACAAAACAAAAGTTAAATAAACAACCCCGGTTGTTTAGAAACTGTAGAATGTTGGACTATGTGACCAGAAACAATGATTCTCAGCCTGTTTATTTCCACTAGCATACCGGAGAGAAGAGATAGAATTTAATAATTGCTCACTGGAAGAATTAAAAATGGCTGAGCCTAGAAGGAAGCATACATGCCTCAGAAACAGGTCCATTTCCAGCTCTTCAGCTGCCTTTCATGCACTTTACGTAAGAGAGTGAATTGGGAGAGCTGGGAATGTATCTCAAGTGGGAGAGTGCTTGGCTAGACTGCACCAGGTCCTCGGTTCTGTACCCAGCACCTTATACTGTACTCAGTACGCAGGAGGTAGAGTCAACAGGATTAGAGAAGCTCAAGGGAGTTCATTCTCAGCTGCACAGCGCATTTGAGGTCAACCTGGCCTAGAGGCCGCACCTTAAATCTAGAGGACAGTTATGTTACCCACTGTAATTACAGGCTCGTCGTGCCATATTTCACCCAAAAGAAATGACCATGGCGGACTAGCCATGCACACACTGTGACAGGAAGCTCAAGGAGACATTTTCTAGTTTGTTGAGGAAATCTTTAGCGCTTGCTCATACTCTGGAAATGGAGTAAGTTCCAATACTCATGGAAACAGGGTCCTCACCTCATGTCAGGGCAGGCAGCCGTATCATTCCTTGGAGATTTTTTGTAACTGCTGATGCCGCACTTGTCAGAATTATTTGTGATATGTTACCTAGTGTCCCAAGTGTCCTTCTCACTCTCCTCTTTTATTGTGCCTTCTTCAACAG
Seq C2 exon
GTAAAGGTGGCTATCCTTAAGTACATAGAAACTCTGGCAAAGCAGATGGACCCAAGAGATTTTACAAATTCCAGTGAAACTCGCCTGGCAGTGTCTCGGGTCATCACTTGGACGACAGAGCCCAAAAGCTCTGATGTTCGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033392-Clasp2:NM_001114347:29
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.030 A=NA C2=0.188
Domain overlap (PFAM):
C1:
PF123483=CLASP_N=FE(11.5=100)
A:
NA
C2:
PF123483=CLASP_N=FE(20.7=100)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: