MmuINT0041931 @ mm10
Intron Retention
Gene
ENSMUSG00000027408 | Cpxm1
Description
carboxypeptidase X 1 (M14 family) [Source:MGI Symbol;Acc:MGI:1934569]
Coordinates
chr2:130394310-130394825:-
Coord C1 exon
chr2:130394737-130394825
Coord A exon
chr2:130394434-130394736
Coord C2 exon
chr2:130394310-130394433
Length
303 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
3' ss Seq
TGCTCCTCTCTGCTTCCCAGCTG
3' ss Score
7.67
Exon sequences
Seq C1 exon
ATCCTAATGACCTGTTCCCTGAGGCCCACACACTGGGATCTTCGAACTCTTTGGACTTCCGGCATCACAATTATAAAGCTATGAGAAAG
Seq A exon
GTCAGATATGACTTCTCTGACCCTGGAAGGAGGTCTGCCTATCTCCTTCCTACCAGGGCAAACTGTCTATGACTACCCATGAGTCCCCTGTCTTTGTGTCCCCTTTCTTCTACTTCTCTCAATCTCTTAAGTTCTGTTCCAGTTACCTTGTCATGACACCTTTTCTGCCCCCACCCCCACCCCCAACTCCTGTGCCTTTTTCTGGATCATACTATATTGCTCCCATCTGTGTGGATCTGTAAGTCTTTCCATGGTTACACATGGTCTGTGTGTAACCGCCTCGTGCTCCTCTCTGCTTCCCAG
Seq C2 exon
CTGATGAAACAGGTGAATGAGCAGTGCCCCAACATCACGCGCATCTACAGCATCGGGAAGAGCCACCAGGGTTTGAAGCTGTATGTGATGGAAATGTCAGACCATCCTGGGGAGCATGAGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027408:ENSMUST00000028897:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.071
Domain overlap (PFAM):
C1:
PF0024619=Peptidase_M14=PU(0.6=6.7)
A:
NA
C2:
PF0024619=Peptidase_M14=FE(13.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAATGACCTGTTCCCTGAGGC
R:
CTCATGCTCCCCAGGATGGTC
Band lengths:
206-509
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types