GgaINT1010404 @ galGal4
Intron Retention
Gene
ENSGALG00000009693 | CPXM2
Description
carboxypeptidase X (M14 family), member 2 [Source:HGNC Symbol;Acc:HGNC:26977]
Coordinates
chr6:31293038-31298131:-
Coord C1 exon
chr6:31298043-31298131
Coord A exon
chr6:31293162-31298042
Coord C2 exon
chr6:31293038-31293161
Length
4881 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
3' ss Seq
TGTCATTTTTTCTTTGACAGTTG
3' ss Score
10.06
Exon sequences
Seq C1 exon
ACCCAAATAATTATTACCACAGAAGAAATGAGATGACGACTACCGATAATCTCGACTTTAAGCATCATAACTACAAGGAGATGAGGCAG
Seq A exon
GTAGGCAGAGTCTGGTGTGTGACTTCCTGGAAGGGGAGGTGAATGGGTGCAGCTCTTCCAGACCTCATACAGAATAGGATTTCTTCCTATTGAAATGTTATTAAATGTGCCTGCAATCTATTCAGTTTTTATCTCTTTTACTCTATTATGAAAAGCCACGTTCTATTAAAATCTCAGTATCTAAATCTGTATGTCATTTTAAACAAGTGTCACTGCACGGCAAGGGAATACTTACACCTACCATGCCATCATTTTGCTTCCGTGTGTATTTAACTGGTAAGTGTTACAGGAGTTTCTCCTCACAGATTTGACCCTGATTTGGCCGTTAGAATTCTTCTATCTTTCTGTGGTTTGGCATAACCACAATAAACTATAGAGCATCAAATTCTGTAGAGTAGTGAAAATCTCACCAGAAACCACTGGAATTGTTTTGTCGAAAGGGAGTCTTAATGAGGAAAAAAAATCCAGTTAGTGTAGTTCTAAAGCTCCCAGCCTTGTTAATCTTGTTCCTATTGCTTCAGATAGTCAATCTTGGTTTTGTTTTTGTTGTTTTTTAATCTTGTTTCACATCAGCACAGACATAGGTGTGGGTTGCACCGAGGGAATGTTTCTGCTTCCTTTCTTTTAGGATATAAAGATAATATGTTTGGACTTGAAGTGTGTGAATCATTTGCTGAATTTTCAGTATATTTGTACTGCATGAATCACTGTTCATTTTTATTGAGCAATTGTGTACTGAGTCACACACTCATTTCAGCAGATATTTCATAGCCTATATCTCTTAGCACAAAGATTAGACAAGTAGAAACTCAATTGGCATAATTACTGCCAAGAGCAATGAAGTAAAGGGTATTTTAGATTCTTATTGCAGAGAGACAGGTTGGTCAATTTAGAAAGGTCTTTGGGAAAAAATAAAGTTCAGTTTTAAAATTGGATGCTTTTCCAATTTTAATAAAAGCAGAAAATTTGTAGCTGTGGTAGAGACTGCTCAGTTGCGACCTGTCTCTGTGTTCTCCCATGATTTGTGTTCCAGCGTGTCAAAGCAGTTCGTGTGTTTAGAACTGACTGCATTCTAATTGGGTTCTGCTGCTGGTAGGCAGAAGATTGCGAGCTGGGATGTGTTAAGTCTTATATCCCCCAAACTGCTCTTTGGTGACAGCCACAGAACTTAATGATTCCTTTCCTGAGTATAAAATAGAACAATAACTGTCAATTTCTATAGTTAGCATCTTTTTTTTTTTTTTTTTTTTTTGTAATACAGAATGTTATTATCAGTTTTGTTAGCACTGCCAATCATCTCATAAAAGCACTGATCTTTGGAGTTATTTATCATAAACACTGAAGGAGGAGGAGGGTGTTCCCTGGGCCATGTTTTGGAAGCATTACATTACATTGCAATATGTCAAACATTTGTAGGAGGGAGGGTTTTTTCAGTGTCAGAATATTTTAATAGAACTCCCTATTTAGGAAGTTGAAATTTATAGTATGAAATGATTCTCTCGGCAGAGCACTCTACTCTTCTTTCAGTCAACAGAGACACTCACTGTAACTCATACTCAGAAGCAGGGATCATCTTGTAGTCCACGAAGTATTTATATAGTCCAGAAAGTACAGACATGATGCATTTGTACTGTGAAGCAAGCTTTGAAAACGGTTGATGGATATTCCTGGAAATAATTTGAGATGGACACTTGAGTATACGTGTTGCTTGTGTAACCTAGGCGAATCATGCAAAAGAATGGAAAACCGTCCCTTCTCATAAAATGAGACATCTCATTAAATAGAATGTGGGAGAGAATCCTGCCAAAGTATCTGACATTTCTTTCCATGTTAGGGCTAGCTATTCTAAAATAGTCACCTTTAAGCTTCAGAAGGAGGTGAATCTGAATACAGCCCAAAGCTTCAACCTCGTCTGTTATAAACTGAAATGTATAACCAAAATTATACTTTGCTTAGAAAATAGAGGTTTTAATTGTTAAGTTTGTTTAACTGTGCGTAATTCTTTCCTCTGGGTCAAGTCAGATTGTAGTCACTCTCCAAGTCTTGTGTTGGTTGTCAGGGCCAGCTTTGCTCATGGAAGTGGTGGAATGATAGTACGGAACGTTATGAATTTGAGCTGTATGTGTTACCTTTTTATCTGAGGGCGAGTCAATGAAATCTAGAAGAGTAGAGTAATTCCTAGCCAACATCCCGTGCTGCATGCAGGGCCAGGTTGATGGTCTCCATCTCTCCACTCAAGAAGGAGGCAAGTTCTGTTTTGACATGAAGCAGAACAGAGAACACAGAGATATCCGTACCTGGTCTGTTGCAGGACTCAGATACCCAAACGATTTTCATAAAGGGTAACAGATAGCCATAACCTGAATGGCATTAAGGGGAGAGCCTTTTTGCCTCCTCCAGGTTTAGGCAGCACACCTTTTTAACACACCTTTTCTGCCAAACTGAAGAACTGGACCTTCAGACACCAGTTCTGAAGGGCTTCTTCAAAGACTGCATGCAGTTTTCCAAGGCGCTAACAAGATAAATAATTGGTACTGACAAACAAACAGGAACTGTCAAATAAGAACTGCTGGTGAGCATAACTCTGGAAATGTTTTACAGCCCTGCTGGTTGTTAATAAAGCCCTGACGGACTATTATCATCAATTGTCTCTGACAGTTTGTACAAGCGCAAAGAAAACACTGTGACATTCCAGGTGACCTATTGTGCCGTTTGGAGGAAATGGGCATGAGAAAAGCAAATATGAAATATGTTCGTTTCCAGCATTGTATTTATATATAAACACTTATCCACGTACTATACCCATGCTGCCATCAGAGGGGCCACAGTGGAGAATGTTGCATAGGACCTGATTCAGGAAAGATTCCTCGTTTAACTTGGAAATAGTAACATGCCTGAAATAAAACAGATGGTTGGGAGTTTGCTGAGGCCAATACAAATATTTCCATTGTTTGTAAAATGCTTTGATATTGGTTCTAGGCATTTTTCTTACCAGGAATGAATTTTAACATGCTTTTCTAAATTGGTGCTCTGGATGGTGCCAGGTACATTGGGAAAGCTTCTGCGCTGCAGTAGGATTTCATGAACAGGCTCATCTCCCTGTTTCAAAGTTGGGTAGCTGCTCTACTAAGAAAGATTTCCATAGCACCCTGTCCGTTGGTATTTTTGGTTCACTGTGAGCAATTTCAGACACAGTGGCTCTTGACTGTGGAGATTTAAAGCATTCTGACTTAACTTTGGCAATGAGTTGTTAAATCTTGTGTAGAAAATGTAAAATAATGTCCCCTGCATCTTATATATGCTTCAGCTGGAAAAACAAATCATGGCATACCCTTTCATACATGCCCAGAAGATTAAAAATATTCCATGGAAATATTTGGGTGCTCATCATACCAGCACATTGATGATTATGGCAGTGGTGGGAAAAAGTACATACAAAACCAGAAAGCACACTGATGAAGCATATGTGAATGCAATTTTAGAGGAGCGTTGAGTTGACATTTGCAAAAAGAAATTGTTTCTCATATGTATGAAGCCAATGTACAAGATGGACAAACCTTTAAAAACAAAAAAAAACCCAACCATCTTTTCTGTCTTTTAGTGTGATTATAAATAGAAGTCTTTTATGAGAGGAATTTTAATGATGTTCTCAATGTGAATTGTGTTTCCACTTTGATTTACTAAATGGTGACATGGGAATTGGACACATCTAATTAATGTTTTTTTAAAATCATCAGCTTTGTTATCATGCAGTATTGTCTCTATATTAATACTGTGAGAGCAAAGAGGTTTTGTTACGCTGCAGTACTTCTTCAATAATGTATGCACCCTTGTTTATGGAAAGATTGTCTAATTAATAAACCCTAGGGCTCCAATTTACAGTAAAGTCCTTATTTATTTCTTTAATCCCTTCCACTGAAAAAAAGATCAAGACAGATAAATTTTGTCATTTAAAGCTATTTGCAAAAATTTCTTAGTAAGAACACATGTTTTTAGCCTTGCTTGTGAATCTTAATGTTCACCTGAAATGTTGCAATGAAAATTGGTTTTGTTTGTTCCTTTGTGGGATGATTTAGACGGCAGATATCCTTATCTGGATAACATCTGCGCAATGCCATTGATGTAAACAGAACTACAGTCCATACCATGACCTTCCTCATGCTCTTTATTAAGCAGTAAGGCTAATTGATTACATTTAGAAGATGTCTCGCAGTATCTGAAGGAAGGATTCACTGAGTAGATTTTGACAATAGATGCTTTCAGACTGGATGTTGGCATTGCCGTTATTATTATTATTTTTGCTGAAGCCTTGTAAGGTAATTCACAGGAATTTGTTACACCATTTATTTGCTAAAAGAGTATATCCTGTTATGTTTATGGGATTAATTCAGATAACACCTATCTTGCTATTTTGGCCTCATCAATATTGCCTAAAACAATGATTCTACTCGTATGAGACTTTATATTGTTATGTAGAGCATGTAGGAAGAGGTGTTGAGAAGCCTCTTTCCATTGTGTAATGTTTTGAGAATACGTGCTCTATTATCTCATGATAGTGTAGGACTTATGTAGGGGATTGTTTGTTTGTTTGTTCTTTATTATTCCTTTTGAACCTACCCATCATGTAGTACTATTGCAGAATTAACTACAACTCATGTAAGAAAGATCTAGAACTTCACCTACACTGTGTTGTTTCATCTTGTTCTAGCTGAACAAAGTTGATGTTGTGTGATAGTAGAGCTATGGTTCATAAAGCATTTACAACTAAGAAATAAGATAGAGAATGAAGAGTGTCTGAAACAACCAATCTGGAATAAAATCATAATAGTTGAATACTGTTGATGCTGTTAGTCTAACTCTATGTCATTTTTTCTTTGACAG
Seq C2 exon
TTGATGAAAACTGTGAATAAAATGTGCCCAAACATCACAAGAATTTACAATATTGGAAAAAGCCACCAAGGACTAAAACTGTACGCTGTTGAGATTTCTGACAACCCAGGAGAACATGAAGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009693:ENSGALT00000015779:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.300 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0024619=Peptidase_M14=PU(0.6=6.7)
A:
NA
C2:
PF0024619=Peptidase_M14=FE(13.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]