MmuINT0041944 @ mm9
Intron Retention
Gene
ENSMUSG00000030862 | Cpxm2
Description
carboxypeptidase X 2 (M14 family) [Source:MGI Symbol;Acc:MGI:1926006]
Coordinates
chr7:139253750-139262588:-
Coord C1 exon
chr7:139262500-139262588
Coord A exon
chr7:139253874-139262499
Coord C2 exon
chr7:139253750-139253873
Length
8626 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TCATTTGCCTTGCCTTTCAGTTG
3' ss Score
9.98
Exon sequences
Seq C1 exon
ATCCTAATAACTATTATCACCGACGTAATGAGATGACCACCACGGATGACCTGGATTTTAAGCACCACAACTATAAGGAAATGCGCCAG
Seq A exon
GTAAGACCAGAGTATGGGAATTCGATATGACTTTTAAAGAGAACATCAGGGCATGAACTGATAAGCACTATGTATGATCCCTCTGGGCAGCCAAACGGAGCCTCCTCTGCTAGGAAATGGCTGAAATGGGGCTTAAAACTAGATGTTTGGCATTGAAGTCTTTAGTCCCTAAAGCTTTTGTGTGTCAGCTGGGTCACTGACTGAAGGAAGTTAATGACTGTGGACTTGAGGGTGAGAGGGTGCTCATGGTAAAACAGGAGGCTTTCTCATGGTTCTGCATGCTTCCACAATTAACCTCCATTAATGTCTTCAGTGCTTTTAAAAGCCCAGGACAGTAGGGACTGTAATTACCTTCTCTTATCAATGGGGAAACTGAGTCACTGTGGTATTGTATAGCACTCTTACCTCTTGCCACAATATTCAGATTTTTAGCTTAATCTTGGTTGTCCACTAGAGTAACCTAGAAATTTTTTTATTGGTTATTTTATTTATTTACACTTCAAATGTTGTCCCCCTTCCCAGTTTCCCCTTCAAAAGCCCCTCATCCCACCCCCCTTGCTTTGCCCCTATGACAGTGCTTCCCCACCCATCCACCCATTCCCTTCTCACCTCTCTAGCATCCTCTTAAACTGAGGTATATAGCCTCCACAGGACCAAGGTCTTCCCCTCCCATTGATGCTAGATATGGCAGTTCTCTGCTATATATGTAGCTGGAGCCATGTATTCTCTTTGGTTAGTGGTTTAGACCCTGGGAGCTTTGCTGTGTGTGTGTGGGGGGGGGAGCCAGTTAGTTGATATTGTTGTTCTTCCTATGGGGTTGCAATTTCCCTTCACCTCCTTCAGTTCTTCCCCTAACTCCTCCATTGGGGTCCCTGGGCTCAGTTGGATGGTTGGCTGTGAGCATCCACATCTGTATTGTTCAGGTGCTGGCAAAGCCTCTCAGGGGACAGCTATACCAGGCTCCCATCAGCAAACATTTCTTGGCATTAGCAATAGTGTTGGGGTTTGGTGTCTGCAGATGGGATGAATCCCTAGGTGGGGTGGTCTCTAGATGGCATTTCCTTCACTCTCTGCTCCATGTTTTTGTCCCTGCATTTCCTTTTGAGATGGTTATGTGGCCCCATCCCTCGATTGGGGGCTGTGCCTATCTCCTGGAGACGGTCTACTCAGGTTCTATCTCCCCTTTGTTGGGTGTTTTGGCTAATGTCATCCCTATTGGGTCCTGGAAACCTCTTGCTTCCCTGGCATCTGGGCTTTACTAGTGGCTACCCCCAGCTCCCCAATCCACCACTGCTACATATTTCTGTTCAATTTCCTGGCCCTCTGTACTTCTCTCCTGTCTCTTCCCATACCTGATCCTGCACCCCCCCCCTTTCCCTCTTCCTCCTCTCTCCTTCCAAGGTCCTTTCTTCCCTCTACATCCTGTGATTATTTTGTTCCCCCTTCTAAGTAGGATGGGAGCATCCACACTTTGGTCTTTCTTCTTCTTAAGCTTCACATGGTCTGTGAGTTGCATCATGACATGTGTGACCTGGAAGATTTATAAAATATCTATATGTGAGCCACCTCAGACACAGTGAAGTGGAAATCTTAGTGGAAGTGTTCAAGAAGTTGTCCCATGCTTCTCTACAGCCAGGCCTCAGAACCCATGATTGGCATTGTTAGGAATCTGAGTCCAGGTAGCAGGAATTGGTGATCAAGTATGGTTTTCTCAGACTGACCCTGAGTCTCAGTAACTCTGAGCTGTGTCAGCCTGTGTGTGCTGGCTACAACACACCCCTAAGAAGGCCAAAGGGCCAGCAGCACCTGAACTCGGTTCATTGTCTCAGAAGCCCCGGGCCTCATTCACACCCAGTTATGTGCATTGCGTGTTTCCTGGGTAGACAAAAGTCTGTTCCCCTCAGATAAAGTACCAACGACAGAGTTTGTTTTCACTGACATCCAACTTGCTAAAGCAAAGAGTTTATTAGGCTTCCGTACAAATTATGAGTTAGGGGTTACTTACAGGAATGTAGGTGATATTAAAGCAGCTGCTTCAACAGGAAGCTTCAGCCCAGAATGAATGACAATTTCTTCATAGCTGTGGAGGCAGGGTCCTCCAACAGCTTCACTTAACCTTCTGCTTTCTGTATAACCCGGTACCTTCAAGACAGGGCCACATGCAGTTAGAATAAAATTACACTCACCTGACAGGGAGGCACAGGAAGAAATGGCTGGGCTCTCAGAGAACAGTCCAATGGCCCTGCTCCTTCCTCCTATGAGGGGAGGTCAACGGTCCATGGGCTGGAACTTGAGGGTCTCTGACAAGTAATCATAGCTGCTCTGTTGAAGACAATGGTGGCTGGTAATGCTCAGAAGACAGCGGTCTACAACAGTGTGCTGGAAAGTATGTGACTAAAGATGATATGCAGAAATAACCTCAGGATTACATTGGCAAGTAAGGACTCACCAAAGACTAGTTAATGTCCCTCAGAGGGAGGTCTTGTGGGCTGACAGACAGAGCCAGCTGCCCAGAACAAAGGCTGGAGGTGTTTCTGAGATCAGTTATCAGGCTGACCTTCAGTTCCATGGAATGAGCATGCCTGGCTTGTGCCACTGTCATTTAACTTGAGATACGCACGGCTTCCAGACACCTGTCAGCACAGACATAGAAGTGGGATGTGCTAAAGAACTCCTCTTACTGTCTTGCTCTTCAAAAACAGAGATAATGTGCTTGGACGTGAGGTTGGTGACTCATGCCTGCTGCTCCACTTTCTCGGGGTATTTTTATGGCTCTGCCCACCATTCTGTCTTCAGGAGCCCTGGTGGGTTAACATAGCCTTGCTCGATGGGTGTCCCAAGGCATCTCTTCACACCCAGCAGTGAGACAAGTATCAGTTTAGTTGGCACAGTGAGCTTCAGGTGTATGCTAAGTGAGCTGACTGCTCAGAGTCCCTGCGACGGAGACCTTGCTATCCCACGTGCATCCCTGGGGCCCTCTGGGGAGAGCTAGCAGTATGTGCTTTATATATGAGGTGGCTATGATGACCACCACTCAGGAGATGGCAGAGCTCAGGGTCACCATTACAGCCACTCTGAGTCACCTCTGAAGTCTTACTGCCCAAAATCACTGAGTTGGAAACTGTCCAGGGAGCATTTCTCAGTCCCAGTTGAGTACTCAGACCAGAAGCCATTGGCATGTAGATCGCTGGTTCTTGGGGCTGGATGAGAAGACAGAATTGCCAGCCCTCTCCCTCTATGGAGTCTTCTAGGTGGCTGTCGAAATATTTCTACCTCAGAGAGGATAGTTGGCTTAGCCTACTACTGAAAGAGACATTTATAGCCAACAATAAAATGAGACGCAGCAATAAGAAGGAACCAAAAAAAGAGTGGAGACACTCATCACGCTGTAAGAGGACAGCGATGAGAGTGTGGGTCACTCCCATGCAGCTTATGCCTTTAGAGCACTGAGCTACATGGCTTATGTTCCAGGCAGAGAGAAGGGGCAAGAGGTGGGGAAGGCAGAGAAGCAGGTGAAATCTATCCAAACACCCATACTTTGAGGCAGAGAGAATTGTGCCAAGAGAACATTGGAGGCATTCCTAGTGTGTGTATTTATAACCCCCTGGTTGCTTGTTTAAATATACATTTGTTTTCATCTCCTTTACTTGGAATGATAGGGACCATGGCCCTGTCACTTACCACAAGTCTATAATCTGAAATTTAGCATACCTGTGCTTAATGACAAATGGGATGGGGACAGATGAGTTGCTTGCTCATGGCTGCCAGAAGCTTCGGCCATAACTGGGGACCAGTTGACATCTGGATTGTTGACAGACTTTAGCAGACAGAGAGGGATGAAGACTGATTGTCTCTGTCCAAACAAGGAGGCCAGCAAGAATAAAAGGGAGGGAGCAAAGGTATCAGGTGGGTGCTGGGAAAGAAGACAGTTCCTACGTGAGCTGTGTTCCCTCCCTATGTGGAAGGAAGGCTAGGAAGTTCAGCCACGACTCCTAGGAAAGGAACTTTTGGGATTGGGGTATAAGAGAGGCATTTCTGAGGAGGATAGTTGACCTGAACCAAAATATAGCTGGTAGGTATATTTAAGGTAGGGTGTGGCATGCTCTTGTTGAGCAATGGCTTGCCCCTCTCCGGTAGGAAAGGTATAGGATTCCCAGGAACGTGTATCTTATCTTTGTTTTGAGACATGATATGGCACACCCCAGATGTTCAGGAGCTGCAGGGTGGCTGTTGTTTAATATGGTGCAGGTAAACAACAGTTAAGGAGGAATCAGGAGTTGTAGAATCACTGGCTGGCAGTATTAATGTACGTGGTGACTGAGGATAACCAGGGACATTGGGCCATGAGGAGGGAAATGAGCTGAGTCTACCCCCATGCTGTGTGGTCAGCCTGTGCATGAGGACAGGTGGTGATGGTGGGAATCCAGGCAAAGTAGTAGGCCTGGCAGTCCAGATAACCAAAGTCCTGACCCATGGATGGTCTTCACCATGCTTTCTTCCCTCTTCTTTCCATGGGGAATTTCACTTTCATTGGCTTAGAGGTAGTTTCTTCAGAGGATAGAAGAAAACTTTTCATCTTCTGCTTTAAACAATTTTTTTAAAAGAAGCACTTCCATTCACTGGTCAAGTATCCCTTTATCAACAGAACCCCAAGTCTCATGAACCCTCCATAGACTCGCTGTACTGGTGAGTCAGCAGTCTTCACATCTGCCTTGTCGCAGCTGTTCACAGATCTACTAAAGTCCAGAGGTTGAGTAATTTCCAAACAATAGAAGTTGATTTTTCGTAGTTCTTAATATTGATGGCCTAGAATCATGACACCAGCAATCTGTGCCTAGTGAGGACTGCTGGTGCCTTGTTTCTGGGTCATCATGTGGAAGATGGAAAGGCAAATAGCCTTCCTAGTTTCCTCCAATCCTTTCATAAGGATGCTCATTCAACTGATAATGGCAGAACTTATGTTACGTAATCACCCCCTGGGAAAATCCCCACCCATCCATATTATGGAATTAGATTTGGATTCCACCTTATGAATTGCTCAAACTACAGCAATAGGTTGCTATCCCTCCAGTACTTGAACTCCTGTTGACAGATTCTGCAAGGCTGTGCTTAGAATACAGCCATCTTTGCCACATGTCTCTCAGTGATGGTTCCCTAGCATCGGGCCCTCCCCTGCCGTCTCCAGTGCTGCCACATGGGCTGTTGAGTGGATGCACTGTGGTTTACCAGCCTTCTCCCTGCTTTGAAGCATTTGGAAATCTCCCAGCTTTTGACTGTGCCAAGGTAGGAAACATGCTACAACAAGTGTCATCATGCATGTAATTTTAGCATTCTCCATGCACGGTTTCCTTCAGATATATTACTGAAAATTGGATTACTAGAAAAGCATCTTGCTATTGTATCTTCTTCAGCAAAGGAGAGAAAGTGAGGGACCCAGACTTCGGTGGGTGCTAGGATGGTGATCGACTTTCCTATTTCAGAGGTGAACGAGTCCAGCAAACCATATTCTCTGTGTGTCATTCCACCCCCTTTCCCCCAAGGAGCTGTCTCAACATTCTTTTCTTAGTTGCCTTCTTTTCTCTTATATCAAATTTTAACAACTAGAAAATTTCCAGTGGGGTTGGGCTTTGAGGAGGCAAGTACACCATGAGATATATATATGTATACACACACATACACACATGCACACACACACACACATGCACACAAACACATACACACATGCACACACACACACATGCACACATACATGCACACACACACACATGCACACACACACACACACACACACACACACACACACACACACGATGTTTCAGACCCACAGAACCAGTTTTTTTCAGCCCTGTTGAGGATGTGTGCTCTAGATCCTAAGGAAACTACTTCATACTCTGTTTAAAGAGCTTATTCTGGCTTGGTTTCTTTTGCTGCGTTAGATACCATGACCACAAGCAACTTGGAGAGGAGATGTTCAGAGACCTCAAGGCAAAACCTAGAGTCAGGAACTATAGCAGAAACTAAGGAGGAATGTTGCTTACTGGCTTGCTTCTCTTGGTTTGCTCAGCTCCTTTATACAGCCCAAGGTCGTCTGCCCAGGGATAGCTGAACCTTCCTACATACAGTAGCAATCAAGAAAGCATCCCATTCATATGTCCACAGACCAGTCTGAGGGAGGCAGTTCCCAGGGATGCCAAGCTGACCATCAAGATTGGCTATCACTGACTTGGACACCATAAAAAGAATACCTAACTCTCTTCAGGACCAAGTAATCACATTTCCTCACAAGTCAGAGTTATATTTAAGTAGAAGGCCTCCTCCCTGATAATGCTTGTGATAGTGTTGTTCCTGGTTTTACAAAGAGAAAGCAGATCAATTCCCATGACCTTCCCAGGGATGGTGGTCACCCAAGATATGCTTCAGGGTATTTCAGAGCGCTACTCAGGAGGAAGAATTATAAAGAGCCTTCCCAAAGTTTAATATTCTTTAGATCTTCATGTTTGTATGAGGGAAGGTTGATTTTGGTATGACAATCCAGTGACACACAGTTTATTTAACACCAACTGTGGCCGAGAAAGTAGGGTTGGGATAAAATCCTGCAGGGAAGGACAGGACACAAGGAAGAAGGGAGATTCTCAATATATGCAGCCCACGAAGCTTCTTGCATCCATTGCTGAGTGTGAGTCCAGGGGAAGATGACGTTAGTCTTCCTGCAGTGTGCTCTTCAGTGCTAGCTGCACGAAAGAGGGAGGGTAACAGGAAAGGGTAGCTAGGCCTGTGCTTGAGCCAGGTTAGCAGTAAACGACCTAGGTCTTTTTTCCTGAAGAACTGATCCTTGGTCTGAACCCAAGACAGTGGTTTACTTGGCAACCAGAACCTGCTAGGATCCTTGACTGCAGGTGACTACACTGGAGGGCCTACTAGGCAGGGACTCGAGGCAAGTGTGCCGTGGCCGTCTTCAATGCTGCAGGAGAAAGGGACACGTGTAGCTTCAAGTTGTATTTCAGAGTGGCAGTGCCCTTCTAATGGGTACTGCCTGCTCACCACCCTTGTCAGAATGTTCTCCTTTGCTCTGCCAGTGCCTGACTCTCCCTTCTGTTCTTAACATATGCCCTGAGATGATCCTTGAAACTCTGCAGTCTTTACTTTCTGTATAGTGCCTGGTAGAGAGTGGGATCCTCAGAAAATGTGTTCTTTAATCCAGGGTCTGGTGCCTGGGCATTGCAAAACACCTTTCACCCAGCATATCAGTACTCACAAGCATCAGTCAGGGATGTGGGGTAAGGCGGTCTCTGGGAGGAGCATGTCTCTTGTCCTCTGCACCCAAAGCTTATTCAACTAGTAGAGATCTCACTGCCTTCCTTGGCAGCTCACATCATTCTACAGACTAAAGGTATCAGTTGACCAGCTGCTCTTAAAATCTAGACCATGGCGCGTGGGCATGCTCCCCACTGCAGCCTGCTTTGCTCATCATTTGGCCCCATGAGGTTTGTGTCTATGGCCAGCACATGTGGTCCTTACTTAGCACTCATGAACTGGACCATCCCATGGTTCCTTCCTGCTATACCACCTGCTCCAGAAGGGCAGAGACACCTTCAAGTATGCAATGATTGTGAAAACATACTATTAAATAATCCACATTTGTGCAATTTGATCTCCAAGGAGACTGATTCAGAAAGATGGAAACCTCAGTGAGAAAGTCATGGCCACAGCCAGGAAGGTGCTGACTGCAGCCAAGGAGCTGATGACAACCAGGGGGGTGGGGGTGATAACCACATATTACATCTGAGAGAGGTGACGATCCCAGCCCAGGAAGACGCCTTACTCTGTTGAAACGGTTGGAATGGAAATGTCAAGTAGCTGGCTAGCAGCCAATAAAAGTGCCTTGTTTGCAGTTCTAGAGGCTAAAAACTTAGGCTCAAGGTGCTGGCCAATGTAGTGCCTACTGAGGGAGGGCTTCCCTACTAGTTCATGTGTGTGTGGCCTCTCTGCACATATGGAGAACACAAGTTCTCTGTCTCTTTTGAAGGGTTCTTATCCTGTTTACGAAGTCTGCACCCACATGACATAATTACCATCCAATGCTTCACTTCTTTTTATAAATAACTGTATAACGTTTATTTGTAAGATGTGTTAGGATGTGAGCACATGCGTGCATCTGTGCTCTTGCTGCAGCCCCAGGACACCTTGTGGGAGTTGGTTTTCTCCTTCCAGTATGTGGGTCCCCAGGATGAGACTCAGGTCAGGGTATTCGCCTATTGAGCCATCTTGCTGGACTCAACGTTTCCCCTTTAATACTCTTGCCTCTATTAGATTTCAGCTGAGGTACACAGACATTCAGTTTATAGCAAGAGGCTTTATCATAATCAAGTATGCTGGGAGCACAGGGCCAGGACAGGCAATGGTAAAGCTCTTCTCCTTAGAGTTGATGGCCAAAGGATAGGTTCTGGCTGGAAAGGTGGGGAAAAAGAGGCCAGAGAGAGAATTCTGGACAGGTATAGCAGTGGGGCTGTGGGGAGGAGGGGAGTGCTGGGTGGGAGGCTGTGAAGATAGCTTCCTTTTGGGAAGCACTGCTTTTTTAGTGGACAGTCATCATGACTCAACATCTGTCATTTGCCTTGCCTTTCAG
Seq C2 exon
TTGATGAAGGTTGTCAATGAAATGTGCCCCAATATTACCAGGATTTACAACATTGGCAAAAGCCACCAGGGCCTGAAATTGTATGCGGTAGAGATCTCTGACCATCCTGGGGAACATGAAGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030862-Cpxm2:NM_018867:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0024619=Peptidase_M14=PU(0.6=6.7)
A:
NA
C2:
PF0024619=Peptidase_M14=FE(13.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: