BtaINT0043627 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018941 | CPXM2
Description
Bos taurus carboxypeptidase X (M14 family), member 2 (CPXM2), mRNA. [Source:RefSeq mRNA;Acc:NM_001206057]
Coordinates
chr26:43852834-43862284:-
Coord C1 exon
chr26:43862196-43862284
Coord A exon
chr26:43852958-43862195
Coord C2 exon
chr26:43852834-43852957
Length
9238 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TAAATCGTCTGATTTTGCAGTTG
3' ss Score
7.01
Exon sequences
Seq C1 exon
ATCCGAATAACTATTACCACCGACGGAATGAAATGACCACCACCGACGACCTGGATTTTAAGCACCACAACCACAAGGAGATGCGTCAG
Seq A exon
GTAAGAATCAGGTTTGTCAGAGGGAAATCTGTCTCGTGCCCGGGAGCATTTAGGTGTTTGTGTTTCTGTGGTTTGTTGAGGCCACACTTAATCTTGTGGTTTCAAGGTTAAGAATGCCTTGTTGGGGTTGGGGGCGCCCAGAGGAAGCCTCTCTTTCCAGCAGGGGGTTGAAGCAGAATTCGAACCCAAACTTTCTGATTTAGTACTGTAGCTCTTCCTCCCACACTGTTGGTGGGAAGTTGGTGCAGCCACTCAAGAAAACAGTATGAAGTTTCCTTCAAAAACTAAAAATAGAGCTATACCGTATGACCCAGCAATCCCATACCTGGGTATGTATTCAGAGAAAATGAAAATTTTAATTTGAAAAGATTCATGTGTCCCAATGTTCATAGCCATGTGTTCATCAAGAGATGACTGGCTTTAAAAGATGTGGCATATATATATACACACACACAATGGAATATTAGCCATAAAAAGAGAATGAGCATTGCCATTTGCAGCAACATGGATGAATTAAGAAAAAATTATCCTTACTGAAGTTAAGTCAGGCAGAGAAAGGCAAATGTTATGTATGACACCACTTATATATGGAATCTAAAAAATAACACAAATGATTTTATATGCAAAATAGACTCACAGACATAGAGAACAAACTGTGGTTACTAAGGGAGAAAGGGAGGGTTGGAAGGATGCATTAGGAGTGTGGAATTAGCAGATCCAAATTACTGTATGTAAAACAGATAAGCAACGGGATTTACTGGATAGCACAGGGAGTTACAGTCAGTATCTTGTAATGATCTATAGTGGAAAATAACATATATTATATATATATATATATATATATATATATATATATGTATGTATGTATAAGTGAATCACTTTGTTGTACTCCTAAAACTAACTTGATATTGTAAGTCAAGTATACTTTAATTAAAAAGATACTGTAGTTCTGAAGAATCACTGTGGGCTTGAGAGGTAACACTGGTTCAAGGACATTAGTCATGTGCAGAGCGGAAGAAGAAAAAGAATCTAGAACAACACTAGTGATCAGGAAGCTCTCACACAGCACCTCCATCTATTTCCCTCCATTAGGAATTTACGTGTGTTAACCTGGTCAGTCTCTATAACCGCCCTGGGAGTGCAAGATTATTGTTGTCCTTATCTTACTGATGGAGAAATGGAGTCACTGAGGGAATATATAACACCCCCTTGTTATTCTGATTCTCTGATTCTCAGTATTAGAATCACTGGAAGAAATCTGAAAAAATACCTATACTTGAAACCTGCCTCAGGCCAATTGAAGTAGAATCCTTAGGAAAAGGGACTGGGTGCTCGCTTCGGCAGCACATATACTAAAATTGGAACGAAAAGGGACTGGGGATCTAAAGTTTTAATGAAAGCTCTGCTTGCGATTCTAATATACAGGGAGGTTTCAGAACAGCTGGTTGATACCTTTATGGCTGTTAGTGCTTTAGTAATGTTAGGAGGAAAAGACATTACAGATGAAATTGTCCTCAAACATAGATACAGAAACCAGGTACTCCAGAAGTAAGTCAGAAAGAGGAAAGCAAATATCATACACTATATGATAAATATATGTGGAATCTAGAAAAGCTGTACTGATAAACCTATTTGCAGGGCAGGAATAGAGACTCAATAGAGAACAGACTTACAGACACAGTGGAGAAGAAGAGGGTGGGACGAACTGAGAGAGTAGCATTGAAACATACACATTGCCATGTGGGAAATAGACAGGTGGTGGGAAGCTGCTGTACAGTACAGGGAGCCCAGGCTGGTGCTCCGTGACAGCCTGGAGGGATGGGATGTTGTGGGAGGTGGGAGGGAGGTCCAAGAGGAATGGGACATGTGTATACCTGTGGCTGATTCGCGCTGATGTACGGCAGAAACCAGCACAGCATCGTAAAGCAATTATCCTCCAATTAAAAATAAAAATTATGAAAAAAGAAAAGTAATTAAAAAAATAAACATCTCCACGATAATTAAAAGCAAAATAAGAAAGAAAGAAACCGGGTACTCCTGAGCTGTTGACAGCATTTGCACATTGGGTATGGAAGGGAGAGTGGACCAAGCATTTAGTAGGAGGGGCTGAAACAGCAGCCCAGTGCTGTCATGCTTTGTCTGAAACCCCTGTTCAGCATTCCCCCAGCCTCGTGCTAGAAAGCCCAGGGAAGTGCTGGCAAATGGAGAAGTCCTTAGATATCAAAGAATCTGCCTGAAGAGACAGAGCAGAGAAATAGACTCACAAAGGTGTTTAAGGAACAAGTGTTCACCGAAGGCCAAGAGAGCATGGCTCAAAGCGAGGGCTCAAAGGTGCAAGGGAGGGAGCCAGCCTCCGCACGAGGGCAGGAGACTTCCCTGAGGTTGGAGCAATTAGGCTGCGCCACATGGGCCCTCTGCCTCAACACAGGGAATCAACAAACCTGGGTTCGTCCTGATATCATTTAATCTGAGATCCTCACACAGCTTCCAGACACCTGTCAGCACAGATGTGGAGGTGGGACATGCTAAGGAGATTGTCTTGCTGTCTGGCTCTGCAGAAGTGAGGCTAATAGGCTCGGACTTGAGTCTGTGAGTCATCCCTGCCACTCTCCATCTTCGGGTGTTGATGTGACTCCGCTCAACCTTCCATTTTATGAAGCATTTGTGTCTTGACTCAGCTTTGTTCAGTGGGCATCACAGGATATCTTTGTGCCCAGAAATGAGGCAAATAACAACTCAGCTGGTACAGTTAATGTCAAAAGCAACCTATCTAAATGCATTGTAAAACGAGCTCACTGCACAGAGAGTCTGGTATCTTTAAACAGTTGTCCCACGTGGAGAATGAGGGCTCCTCTCATACGAAAGAGCTAATGGCTGTGCTTCATTACCCTGAGGGACTCTGGTCCCCGTCATTTGGTAGGTATCAGAGCTAAGAGGAACCTGGGAAGGCAACCGGCCCCTGCAGGGGACAGTAGGTGACCACTCCGAGGTTCCTGGACCCTGCAACTGGAAACTGTCCTGGGGGGGGGGGGGCATCTATCAATCCCGAAGTGTTCAGGCCAGAGTGGCTTGCCATTTGGATTCCTGGTTCCTGGGGATGGGAGAGAAGCCAGCACTTTTAGCGATACCCTGTAGGGAGTCTGCTAAACGACTGCAGAAATCTTTCTACTTCAAGTGAGGGGACAATGTTAGTTTATCCTAGTATTGAGAGAGACATTTGCAAAAACATAAAAATGAGAAGCAGTCGCAGGAGCAGGGAGTGAAAAGAGAAAACAGAACAGCTGTTGCTTTGGAGGGGAAAATCATGAGAATGTGAGCGACTCGTGGAGGAATTCTTTCTGGAGCACTGGCTTATAAGACACTGTGCTCCCCACAAGGGAGCCCCCAGGGGGCTTGGGAGGGGAGAGGGGGAGGGGAGCGAGGAGGCTGGAGGCAGTCTCGCGAACACTGATACTGTGAGGCAGAGTGAGTTAATTGCTCTCAGCACTGAGAGGACTTCACACCTCATGTAACCATTTATAATCGCTTTGTCATCTCTGTGTCTGCATGGACTTTACCCTTCGCCTTCATTTGGGACCATGAGAGCAGACACTCAATCGTCTTAAATCCATAAAGTGTATGGGATTTGTTGTTGCGGGGAGATATGTGGGGGACAGGAGGGAGAGGTGGCTGGCGTCGTTGGCCATGGTTGGGAAGGGATGGGGTTGCAGGTGAGGTCAGCTGTGGTCCAGGGCCTGTGGCCGGAAGAGACAGAAGGAGGGGGGGTCCCAGCAGCAAGGACGGGGAGCAGGACCATGGAGGTGGGAGGGTTGGCACTCCACCAACTGTCTTCTGGTTTTGATCTCCAGGGCAGCTAAGGATGGTCCTGGGCAGCAGGCTGTGGGACCGCTGAGCTCTTGACCATGGGGGTGGTGATGGTGGCAGCAAGCCAGGGCAGGACCACAGGCAAGCCCAGCTTCGCGCCCATGGGACACCTCCTACATTGGCTCTCTCTGGAATTCCTCCCTCTGGAATTCCTTTTCACTTGATCCGGACAAAGCAAATGAGTTAAGATGATAGAAGAGGACTTTTTCTCTTCTCACTTCTTTCTTTATTTTTTAAAAAATCCATTGGATAAACAACATTGGATCCATATCAAATGCAAACCAAAAATCTCAAGGTTAATCCTCCATGAACCCATGGCTTTCATCCCCACTCCATTTCTCTCCAGGGTTTGCGTTTCTATGTTCACAGAATTCATGCAGTTTTGATCAGACTATGGTTAGCCGCTTTGCCCAGACTGTCTCACGTCATGTTGGATCATTAGCCATGTCTCATGCTGGCTTCGTAATTGTCATTGAAGTGCTGCAGGATGAATCAGAATTTCCTCAGCTATCTTCCTGCTCTGGAGCTTCAGGATAGCACCACACTTGTAATGAACAGTGAGAGAGGATGAAACAGGCTACAGCCAGTGTCATCATGCATGTAACTTACCGTGCTCTTTATGAAAATTTCCTCTGATGTATCCCTAGAAACTGAATTACCAGGAAAGGGGCTCTTTCTTCTGTCTCCTTCAGGACAAGAGGGAAACAATAGAGACGGGGGGATTCAGTAGCTCCCAGAATATGATTTATTCTGAGAAGAGGAAACAAGAGTCTTGAGGATAATGAACATCTTACAAAACCCACTTCTCTCAAGGATAATGTTTCCCTACTGGCCCTTTCTAGACACTTTTCCTAATTACCCATTATAAAACTAAGGAATAAGATTTTGTTTGGTAAGGTTGCACTTTGGAGGGTCATAAAGCTTGTAAGAGCTAAGATTTTTATCCCCGGGAGAACCAATTTTCACTTCCTTTGGGGTGATGTCACCCTTGTTGAGGATGCATGCTTTTAAGGCCATCAAGAAAATTCTGTCTCTTCCTCTCACTTTAAACTTCAAGACCCAAACATTTACCAGTAAGACTCAAACTCCAGAATGTCCTTTTTGACTCTTTTCAGAAATAAGCAAGACGGATCACCAGCTGAGTCTTAGATGGTGCCTGTGGCCCCCAGAAACGTTGGCTCAGATGGTGACGAATCCGCCTACAATGCAGGAGAGCTGAGTTTGATCCCTGGGTTCGGAAGATCCCCTAGAGAAGGAAATGACAACCCATTCCTGTATTCTTGCCTGGAGAATCCCATGGAGAGAGGAGCCTGGTGGGCTACAGTCCATGGGGTTGCACAGAGTCGGACACGACTGAGCGACTTTCACTAAAACTTCCTAAAGGGAGTCTCCAAATGCCCGTATTCTTGTTCCAGTCTGTAGAAAAGATACTTGTGATATCAAAACACCGAGAGGAAAACCTGACTGGTATAAAAATACTGCAGTGGTGTGTGGAGGATGAAGAGGTGACTCTGATGACTCATGGTCGAGAGTCATCCCATCCTGAGATGCTGTGTCCCTGGCTGACTGCTCATCCTAGGGAATATGCCATTTGTCTTTTTTTTTTTTTTTCAATGTCAAGGTGGAGATTTCCAGCACAGGGGGCCCAGTTCTCAGGCAGCTCTTTGAAAGGGGAAGGAGGGTAGGCATTAAATGGCAGCCAGGCTCTGTGCTGATCACCTAGTTAAGGATGAGCCGAGTGGCTCTGTGTCTGAAGAACCGGTCACTGATCTGAACGCAGGACAGGGGACCACCGGCTGACCGGGGTTTGGGGAGGCCCACACTGGTAGCAGAGAATGACTGTGGTCAGCAGGGACAGGTGTGCGAGGCCCGGTCAGATAGTGCTTTGCGCCGGGCCATCCTCCAGAACGGTCCCATGTAGAGCAGACAAAGGAGGTGGCAGGGTTGATTTTGATTGCTTTACTCCTTCATGGACAGAGTGCTGGCAAAGTAATGCTCAAAATCTTCCAAGCTAGGCCTCAGCAGTACATGAACCGAGAACTTCCAGATGTTCAAGCTGGATTTAGAAAAGACAGAGGAAGCAGAGATCAAAGTGCCAACATCTGATGTATCATAGAAAAAGCAAGAGAATTCCAGAAAAACACCTACTTCTGCTTCATTGACAAGGCTAAAGACTTTGACTGTGTGGATCACAATAAACTCTGGAACATTCTTAAAGAGATGGGAATACCAGACTACCTTACCTGTCTCCTGAAAAACCTGTATGCAGGTCAAGAAGTAACAGTTACAACCGGACATGGAACAACAGACTGGTTCCAAATCAGGAAAGGAGTATACTGTCACCCTGCTTATTTAACTTATATGCAGAGTACATCATGTGAAATGCTGGACTGGATGAAGCACAAACTGGAATCAAGATTTCCGGGAGAAATATTAATAACCTCAGATATGCAGATGACACCACCCTTATGGCATAAAGCAAAGAGGAACTGAAGAGCCTCTTGATGAAGGTGAAAGAGGAGAATGAAAAAGCTGGCTTAAACTCAACATTCAAAAAGATCATGGCATCCGGTCCCATCACTTTATGGCAAATAGATGAGGAAACAATGGAAACAGTGACCGGCTATTTATTTGGGCTCCAGAATCACTGTGGATGGTGACTGCGGCCATGAAATTAAAAGATGCTTGCTTCTTGGAAGAAAAGCAATGGCAAACCTAGACAATGTATTAAAAAGAAGAGACATTACTTTGCCAACAAAAATCCGTATGGTCAAAGCTATGGTTTTTCCGGTAGTCATGTATGGATGTGAGAGTTGGACCGTGAAGAAGGCTGAGTGCCAAAGAACTGATGCTTTTGAACTGTGGTGTTGGAGAAGACTCTTGAGAGACCTTTGGACTGCAAGGAGATCCAACCAGTCAATCCTAAAGGAAATCAACCCTGCAAATTCATTTGAAGGACTGATGCTGAAGCTGAAGCTGCAGTATATTGGCCTGATGCGAAGAGCCAACTCACTGGAAAAGATGATTCTGGGAAAGATTGAAGGCAGGAGGAGAAGGGGATGACAGAGGACAAGATGGTTGGATGGCATCACCAACTTCAACGGACATGAGTCTGAGCAAGCTACGGAAGATGGTGGAGGACAGGGAAGCCTGGCATGCTGCAGTGCAAGGGGTCACGAAGAGCTGGACACGACTGAGTGACCGAACAACAACAATGACAACCTGGACAGATAAGGACCCATGAGTCCAAAGCCCTGGCTCCACCTGGTTCTAGATGGGTGACCTCGGGCAAATCCCTCAGTGGTCTCTCTGAGCCTCAGTCTCCATATCTGTAGAATGGGTTCAGGCCCCTTTGATTACCTACTTCAATTATCTACTTCATTGGTGTTTGTCATGATAAGACTCAGTAGAGAAATAGAACTTGCTGTGACTAATGACGTCAATACCGAGTCTCTTATTAAAACTTGGTGCCACTCCTCCATGGCTCCTGCTCAACCCTGCGGTGTGTATTCCTCACAGTGAGAGTTGTGACGCTAGATCAGCCTTGCTTGCATGTGGTTTCTCCATGGGTGGTGGGTTTCCATCTCTGCCATGGTTGGACAAGAGTCCTTTACAGTCGTCTTTCTCTTTCTCTCACCTAGATATTAAAACACAAAGTGAGTTATCATAAATCAAAGTATGTTTCCCCCTTGCGGGAGTGGTGAAAAAATCAAACCTTGAATGCCTGACCAGGGCTGCAGTTATAACACCTCGTAGGTGCGTAATGAGAGCCAAGCTCCAACAGCAATGAATCCTCCGCTCCTTTAGGGATGCCCCCCAGTGCCCCGCGATTGCCCTCCACGCATCAGTGCAGAATGCCAGAAAGGCAAGAAATGCAAAGAAATTGCAGAATGCAAGAAAGGCAAACCAGTGTGATGTCACTGCACTCTGATAGAAGTTCTACCTGATACCATTTTTCCAGTTCTCGTAGCTTTCAACCTACTATAATGTTTGCAGCAGATTTGTCTATGTACAATTTACCAGGACATTTTATAGATCGTTTGGCTGATAGGAATGATTTGAAAGGTGCATCGAGCACGTCCAGGCCCACGCTGCCCCTCTGTGAGCCACGCCCTTGCTCTATCACCGCTAGCACAGCTCCTGCTCAGCTTGAACAAGGATGGAGCTCTCCCTGGTGGGCACACGCCCAGGCTGGAATGCCCTCGCTCACTGCTTGCATGGAACCCAAGCTTCCCTCTTGGTCTGTAAAACTCATGTACTCTCCTGATGCCACCATGGGGAAGTGTGGCTGGTCTGGTGCCTGGCAGGAATGTCCTTTGAATCAGAGCTTCTTTCCCTTGGGGATGGCACAGGGGTTTCACACAGAGAGAGTCAAAGCAACTTACCAGCTTACCCACAGGTTCCTGCTCAGAGATGGAGGTGTGGCAACCTCTGGTGGATGTGTCTCTGTCCTTCACCCCTGTCATTAGCAGACCCTTATCCCCTCCTCTGGAAGCTTGTCTGACAAGCTCAACTATTAAAGCAAAATTCAGGAAACGGCATGTATGTATTTGACTTTTCTGTGGAAGCCTGTGTCCCCCACCCTCTCACAGCATGGCTCCCATTACCTCATGCCCCTTACTTGGCACCAGTGAAGTGGCGATGGTCCAACTCCATCTGCTGCGTGCTGTGGGCACCAGGAGGGCAGAGCAGCCTGATGTCATAAATGCTCATTAAAGTATAAGACAACATGATGTTCAGTAATAAATACTTATTTAGGCAAGGGATTCCCTGGTGGCTCAGACAGTAAAGCATCTGCCCACAATGTGGGAGACCCAGGTTCGATCCCTGGGTCAGGAAGATCCCCTGGAGAAGGAAATGGCAACCCATTCCAGTACTCTTGCCTAGAACATCCGATGGATGGAGGAGCCTGGTGGGCTACAGTTCATGGGGTCTCGAAGAGTTGGACACGACTGAGCGAGTTCACTTCACCACTTTAGGCAGGGCTATGGCTGCCCACTCCAGTATCCTTGCCTGGGAAATCCCATGGACAGAGGAGCCTGGCAGGTTACAGTCCATGGGGTTGAACAGAGTCGGACAGGACTTGGGGACTAAACCACTACCACCAGCATAGAGAGAACAGGCTGTCTTTAGGTAATAAAGCCACCAAGGGAGGTGATACCACCACCCAGGAGGGTGATAAGCGCAAGCCAGAGGTGCTGAGAGACAGGGCAGGGGGAGCAGAAGGGGACCCTTCCAGACAGGGTGAGAGCATGGTGTATGGGAGGGTGGGGGTGTGCAGGGGGCTGTGGGAGGGGGCTGTCTCCTTGAGAGCTCTGCCCACTATGGCGCATAGCCATCATGGCTCAGAGCCATAAATCGTCTGATTTTGCAG
Seq C2 exon
TTGATGAAGGTCGTGAATGAAATGTGCCCCAACATCACGAGGATTTACAACATCGGCAAGAGCCACCAGGGCCTGAAGCTGTATGCCGTGGAGATCTCCGACCACCCCGGGGAGCACGAAGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018941:ENSBTAT00000025207:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0024619=Peptidase_M14=PU(0.6=6.7)
A:
NA
C2:
PF0024619=Peptidase_M14=FE(13.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]