DreINT0027343 @ danRer10
Intron Retention
Gene
ENSDARG00000091726 | aebp1
Description
AE binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2390]
Coordinates
chr10:2801376-2801721:+
Coord C1 exon
chr10:2801376-2801455
Coord A exon
chr10:2801456-2801597
Coord C2 exon
chr10:2801598-2801721
Length
142 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
TTGTGTGTGCGTATAACCAGATG
3' ss Score
6.68
Exon sequences
Seq C1 exon
CTAGTTATGCAACTGAGAATGACGTTCCACCAACAGATGATCTGGATTACAGGCATCACAACTATAAAGAGATGAGACAG
Seq A exon
GTGAGAGTTTGCAGGTATTCTCTAAAGCTGCTGCGGTAAAAATGGCATCACAACACATCCAGCATCACATTTGGACTCAACTTTGTTAATTTTTTTGCTGTTAAATTGAAGAGTTTTCATGTTTGTGTGTGCGTATAACCAG
Seq C2 exon
ATGATGAAGGTGATCAATGAGGAATGCCCTAATATCACCAGAATTTATAACATCGGGAAAAGCTTTCAAGGGCTGAAGATGTACGCCATGGAGATCTCAGACAACCCTGGAGAACACGAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000091726:ENSDART00000131435:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.315 A=NA C2=0.238
Domain overlap (PFAM):
C1:
PF0024619=Peptidase_M14=PU(0.6=7.4)
A:
NA
C2:
PF0024619=Peptidase_M14=FE(12.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTATGCAACTGAGAATGACGT
R:
CTGGCTCGTGTTCTCCAGGG
Band lengths:
202-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]