RnoINT0014652 @ rn6
Intron Retention
Gene
ENSRNOG00000013720 | Aebp1
Description
AE binding protein 1 [Source:RGD Symbol;Acc:1306922]
Coordinates
chr14:86108028-86108464:+
Coord C1 exon
chr14:86108028-86108113
Coord A exon
chr14:86108114-86108340
Coord C2 exon
chr14:86108341-86108464
Length
227 bp
Sequences
Splice sites
5' ss Seq
CAGGTTAGG
5' ss Score
6.25
3' ss Seq
TCATCTCTCCTCTCTGCCAGCTG
3' ss Score
8.88
Exon sequences
Seq C1 exon
CTGTCTACAGCTACTACGCACAGAACGAGGTGGTGACCACTGACAGCCTGGACTTCCGGCACCACAGCTACAAGGACATGCGCCAG
Seq A exon
GTTAGGGACTGGAGTCACAGGCAGGGATGGGTCCTGCCAGAGTACAGGAGAGCTTAAACTTAATTAGCCCTGTCCTTACTTTTTCCGAAGGCGTAGTCTCCCCTCGAGGAATCTTGCTTTAGGGAGGAAACTAGCACCTGGGGGCATCTGAGAGGGGCTGGCGTTCCCTGCCTTTTCCCATAGAACCCATGAGGGGAGCAGGTGACGTCATCTCTCCTCTCTGCCAG
Seq C2 exon
CTGATGAAGGTTGTGAATGAGGAGTGTCCTACCATTACCCGCACGTACAGCTTGGGCAAGAGTTCACGAGGGCTCAAGATCTATGCGATGGAGATCTCAGACAACCCCGGGGAGCATGAGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013720:ENSRNOT00000018846:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.024
Domain overlap (PFAM):
C1:
PF0024619=Peptidase_M14=PU(0.6=6.9)
A:
NA
C2:
PF0024619=Peptidase_M14=FE(12.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCTACAGCTACTACGCACAGA
R:
CTCATGCTCCCCGGGGTT
Band lengths:
205-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]