BtaINT0015417 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012237 | AEBP1
Description
Bos taurus AE binding protein 1 (AEBP1), mRNA. [Source:RefSeq mRNA;Acc:NM_174839]
Coordinates
chr4:77884730-77885103:-
Coord C1 exon
chr4:77885018-77885103
Coord A exon
chr4:77884854-77885017
Coord C2 exon
chr4:77884730-77884853
Length
164 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
3' ss Seq
CTGTCTTTTCTGGCACCCAGCTG
3' ss Score
6.47
Exon sequences
Seq C1 exon
CTGTCCACAGCTACTACGCGCAGAACGAGGTGGTGACCACCGATGACCTGGACTTCCGGCACCACAACTACAAAGACATGCGGCAG
Seq A exon
GTGGGGTGCTTGTCCTGAGGCTGGGGTCCTGTCCAGGCACTGGGCTCAGGGCTAACAGGTGCTTCCCCACAGAACAGACAGGGCCGTGGGAGAGGCATGGTCACTGGGGGTGGGTTGGGGGCAGGGGGCAGGCTGTGTAACTCCCTGTCTTTTCTGGCACCCAG
Seq C2 exon
CTGATGAAGGTGGTGAACGAGCAGTGCCCCACGATCACCCGCACATACAGCCTGGGGAAGAGCTCGCGAGGGCTCAAGATCTATGCCATGGAGATCTCGGACAATCCCGGGGATCACGAGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012237:ENSBTAT00000064740:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.024
Domain overlap (PFAM):
C1:
PF0024619=Peptidase_M14=PU(0.6=6.9)
A:
NA
C2:
PF0024619=Peptidase_M14=FE(12.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTCCACAGCTACTACGCG
R:
CCAGCTCGTGATCCCCGG
Band lengths:
210-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]