MmuINT0012251 @ mm9
Intron Retention
Gene
ENSMUSG00000020473 | Aebp1
Description
AE binding protein 1 [Source:MGI Symbol;Acc:MGI:1197012]
Coordinates
chr11:5768734-5769191:+
Coord C1 exon
chr11:5768734-5768819
Coord A exon
chr11:5768820-5769067
Coord C2 exon
chr11:5769068-5769191
Length
248 bp
Sequences
Splice sites
5' ss Seq
CAGGTTAGG
5' ss Score
6.25
3' ss Seq
TCATGTCTCCTCCCTGCCAGCTG
3' ss Score
8.08
Exon sequences
Seq C1 exon
CTGTCTACAGCTACTACGCACAGAATGAGGTGGTAACTACTGACAGCCTGGACTTCCGGCACCACAGCTACAAGGACATGCGCCAG
Seq A exon
GTTAGGAACCCGAGTCACAGGCTGGGATGGGCCCTGCTCGGGTACAGGAGAGCTTATACTTATATACCCCTGTCCTTACTATTCCAAAGGCATAGTCTCCCCTCAGGGAATCTTGGTCACCCCTTGCTTTAGGGAGGAAACTAGTACCTGGAGGCATCTGAGAGGGGCTGGAGTTACCTGCCTCTTCCCATAGAACCCATCAGGGGAGCAGCATCCCGGTCAGTGACGTCATGTCTCCTCCCTGCCAG
Seq C2 exon
CTGATGAAGGCTGTCAATGAGGAGTGCCCCACAATCACTCGCACATACAGCCTGGGCAAGAGTTCACGAGGGCTCAAGATCTACGCAATGGAAATCTCAGACAACCCTGGGGATCATGAACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020473-Aebp1:NM_009636:14
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.024
Domain overlap (PFAM):
C1:
PF0024619=Peptidase_M14=PU(0.6=6.9)
A:
NA
C2:
PF0024619=Peptidase_M14=FE(12.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCTACAGCTACTACGCACAGA
R:
TCATGATCCCCAGGGTTGTCT
Band lengths:
204-452
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: