MmuINT0043540 @ mm9
Intron Retention
Gene
ENSMUSG00000034101 | Ctnnd1
Description
catenin (cadherin associated protein), delta 1 [Source:MGI Symbol;Acc:MGI:105100]
Coordinates
chr2:84445341-84448573:-
Coord C1 exon
chr2:84448486-84448573
Coord A exon
chr2:84445404-84448485
Coord C2 exon
chr2:84445341-84445403
Length
3082 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTG
5' ss Score
8.35
3' ss Seq
AACTTTCTAATTCCATATAGATA
3' ss Score
6.35
Exon sequences
Seq C1 exon
GTGAATCTAAACAATGCATCTAGAAGCCAGAGCAGCCATTCATATGATGATAGCACTCTCCCCCTCATTGACCGGAATCAAAAATCAG
Seq A exon
GTATTGTTGCCAAGCGGTGCAGCCTTCTCTGTTTAGTGCTCCTGGAATTCTTTAATGGCTTACTAACTAAGAATAGGACATGCATTTATTCTAAATAAGCTGGACACAGAGTAGGGGAATAATGTTTTACATCATAGTTATAATGTGTAAGAGAATAGGTTTGAATTTAGGAATCTAACAAAGCAGTAAGGGGTGTGGTGGTGCACACTTGTAATCCCAGCTAGCACTCTGAATTGGGGAAGGAGGATCAGTAGTAAGGCAAGGCCAGCATTGGCTACACGACACCCTGGCTCAAGGGAAAACAAAACCAAAATCAAGACAGTTAGTAACCTGAGTGCAGCTCCTTTAATTTGCCTGTGAGCTTCAAGTTCCTGGAGAGTGAATCAGTTTTCTGTTTAATCTCTTCCTCTCTTAAATTTCCATTCTAATGACTAATGTGCCTGGCTAATTATTAGTGCTTTTCTAGTTGGAAAAAATAAAAACCATTGACAACCATAAAGTCCATTATTTCTAGTCCCAAGAAAACAACCCACTGCTATACTGTGTGTGTGTGATTGTGTTTGTGTTCGTGTGGTACTGGGGCTTGAACCCAGGCTTTCTAGGCAAGTTTTCTGTGTCCCTGAGGGAGAGCTTTTTAAACTGCTTTATCATGGATGAATTACATATTTAGTATTATATATTTTTTTCTATTTCACTAAAAGTATATACTGTAACCTTTCTTATCTTAAGATAAGGCTTTTGGCTTTTGATTCCACCCATGGCTTTTGGAGCGTGGTGTGAGGGCCCCAAGATTCTTAGACTTATGTGCCAAAGGCATAGCAGCAGTGCTTGCTGCTGGCGGCCCAACATAGATGAGGTGACGCTATTCTGAACAAGTCGTTTTTATTCCCATCTATTCTACAGTTAGAAAGTTACCTCCACTTAGGAGCATCCTGGTTGGAGCTATAAACGTTATATTTCTACCCCTAAGTACACGTTATTTGATGTGTACTGCTATGGATGAAATTCGGAGCTCTGGTGCTGTGTAGGGAGCCACTGTGGCTGTCTCGGGTTAGACTATTGACATTACTAGTTAGACTGCTGTTTTTATAGAGTGCTACTTTTCCTTATGAAGCAGCTGATACACAAGTGGTGATTATTTCAACATATTATTTGGCAAGCATTTCCTCAAAAATAAACACAAAAACTTTTATCACTTTGGTGAAAAAACTGATACTATTTTCTACCTGAGTAAAAAATACAATTTTGGAGCTGGGCATGGTGGCACACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAACAAACAAACAAAACAAAACAAAACCAAAAAAACAATTTTGGCTGAGTGTGGTGATTCATCCCAGCACTTGGAAGGCTAAGGCAGGAAGATTGCCCTTCATTTAAAGCCAGCATGGACTACATAGGGGTTCTAGGCCAGCTTGAGCTGTAGAATAAGACCCTGCCCCCAAGATCCCAAAGGAGAAAAGTACAGCCCAGAAAATCATACCCATGTTTCAGAGCTTAGTAACTTCCCACTACTTAAAGGACTTTCTTTAGGGCTATCAAGTGGCTCAGCAAGTAAGTTCACTTGCTACTGAGCCTGACAGGAGCCTGAGTTCCATTGATGAGAGAGAACTGACCCCTGAAAGTGGTCTTCAGACCTCTGTATTCATGTTATGCTGTGGATGGACACATACACTCACTCTCTCCCTCCCTCCCTCCCTCCCTCCCCCCCCTCTCCCTCCTACATGCACATTCATGCCCGTGCGCGCGCGCACACACACACACACACACACACACACACAGTATAATAATATAATTTCTCAGGCTTTTATGATTATATAAGTGGTGATATAAATGTATTTTTAAAATACACATACATAATAATATGTGTTCAATTTTACATTTGCATAGTTCTGTAAACTGTTATCTCTCAGGGAGACAGTGCCATAATATTTCAAAAATCTGCACAAGTAAATGTTACTCAACCCGTCTATTTTTTGTGGGTTTCTTGATGCAAAGTCTTACCATGGTTGCCCGGAGCAGGAACTTGTAGTGTTTCTGCCTTCTAAGTGCTAAAATTATGAGACTATGCTCTACTTCAGTCTGTTTTAGTAACCCAGAGTTAAAAGTGATATATAAAAGTGTTCAACAGTGCTCCCCACCTCAGGTTTGTTTTTTCATTAACATTTATTATTGTATATGATGTGTGTTGTGGGCACACACACTGTGGCCTTCGAGGGGAGGTTGTTCTTGCAGTTATACCTGACTTCTGGGTTCAGACTCAGACTGCCAGGCTTGTGCAGCAAGTGCTTGAGCCCCTTAGCCACCTTACCAGCCCACATACAGTGCTTTTTAAATTGAAGGCATTTATGATTATGCAAAAAAATAATTCTGATGTGGAATAGATGTTTACATTTCTGAATATAGTAATATCTGCTCATTCCATGCCAGTGAAAGTCATTTGCATCCTCATTTATTTCATATGTGTGTGATTGAGGACGAGGCAAATGCTTTATTTACTGTTGAACTATATCTTTAGCTAGACCCTTATAATTTTTAAGATTAAAGGGGCTTTGAGATGTAATGGCCCATATTGTTAAAGTCGTTGTCGTCCCCGTCCCCGTCCCCCCCCCCCCCCGCCCTTATTCTTTATTTTGTTTGGGTGTGAAGGTACATAAGTGGAGGTCAGAGGGAAACTTGAAGGGCTCAGTGTCTTCCACAGGTTGTTCCCAGGGATCCATTCGGCCATCAGGCTTGACAAATGCCTCTGAAAGGTTTCTTGTATTTGGGTGTCTATAGGAAGGGGTCAGAATTCTGCAAGGGCTTTCCTAGAACTGTAGGTTGTGATTAGTCTTGGCACATACTATGTGCTGAGTAAAACTTTATTGAATAAAGGCAAGGAAAGATGGCACTCCCAAAAGAAATGTCTACTTTATATAGATTCTGGTGTATTGGATTTTGACTTGGGTAACTTTCTAATTCCATATAG
Seq C2 exon
ATAAGAAACCTGACCGGGAAGAAATTCCAATGAGCAATATGGGGTCAAACACAAAATCATTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034101-Ctnnd1:NM_001085449:14
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
ENSMUSP00000064518, ENSMUSP00000097524, ENSMUSP00000107299, ENSMUSP00000107304, ENSMUSP00000107305, ENSMUSP00000107307, ENSMUSP00000107313, ENSMUSP00000107315, ENSMUSP00000107316, ENSMUSP00000107317, ENSMUSP00000107318, ENSMUSP00000107319, ENSMUSP00000107320, ENSMUSP00000107321, ENSMUSP00000107322, ENSMUSP00000107324, ENSMUSP00000107327
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: