MmuINT0044703 @ mm9
Intron Retention
Gene
ENSMUSG00000024365 | Cyp21a1
Description
cytochrome P450, family 21, subfamily a, polypeptide 1 [Source:MGI Symbol;Acc:MGI:88591]
Coordinates
chr17:34939930-34940206:-
Coord C1 exon
chr17:34940105-34940206
Coord A exon
chr17:34940017-34940104
Coord C2 exon
chr17:34939930-34940016
Length
88 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
3' ss Seq
GACTCTCTTTCCTGCCCCAGTTC
3' ss Score
7.74
Exon sequences
Seq C1 exon
GACAGCACGTTGGTACAGACCCTTCACGACTGTGTCCAGGACTTGTTGCAAGCCTGGAACCACTGGTCCATCCAAATCTTGACGATAATTCCCCTTCTCAGG
Seq A exon
GTGAGGAGTTGCAGCCCAGTCTCCCCTGGGTTGTGGGGGAGGGGACCACCAGTCTCCACCCTGCAGCTGACTCTCTTTCCTGCCCCAG
Seq C2 exon
TTCCTCCCCAACCCAGGCCTCCAGAAGCTGAAGCAGATCCAAGAGAGTCGGGACCATATTGTCAAGCAGCAGCTGAAGCGGCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024365-Cyp21a1:NM_009995:5
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(7.4=100)
A:
NA
C2:
PF0006717=p450=FE(6.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACGTTGGTACAGACCCTTC
R:
TGCTGCTTGACAATATGGTCCC
Band lengths:
169-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: