MmuINT0044757 @ mm10
Intron Retention
Gene
ENSMUSG00000060407 | Cyp2a12
Description
cytochrome P450, family 2, subfamily a, polypeptide 12 [Source:MGI Symbol;Acc:MGI:105055]
Coordinates
chr7:27035311-27036832:+
Coord C1 exon
chr7:27035311-27035452
Coord A exon
chr7:27035453-27036464
Coord C2 exon
chr7:27036465-27036832
Length
1012 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
3' ss Seq
CTTCCCTCTCTCCTCTTCAGGGA
3' ss Score
12.6
Exon sequences
Seq C1 exon
GGCACTGAAGTGTTTCCTATACTGGGTTCTCTGATGACAGACCCAAAGTTCTTCTCTAGCCCCAAAGACTTCAACCCACAGCACTTCCTGGATGACAAGGGACAGTTGAAGAAGATCCCTGCTTTTCTGCCCTTTTCCACTG
Seq A exon
GTAAGAAAATACTGGGTTACCAGACCACTGCTCACACTAACAGGGGTAGCTCATGTCAGCTCCCCTCTTTGTGATGCAACCTAACATTAAGCCAACCAGTTGCAGCCCCTGGACCTCCCAAGCATCAGACATCCTGGATGCCTATCAAAGGGTCAGTGGGATCAGTGATCTCTTTCAGAGAGCGGGGGGAGGGGGTGCAGTTTTTAATGCAGTTTTAAATGATTTTTTTGTTTCCTTTATTTTAAAAAATAATTTATTTAATTTGCATTGGTGTAAAGTTGTTGGATACCTTGGAACTAGAGTTACAGACACTCATGAGCTGCCATATGGGTGCTGGGAATTGAACCTGGGTCCTTTGGAAGAGCAGACAGTGCTCTTAACCACTGAGCCATCTCCAACCATATATTCAGACTCTTTAAAAGAGGATGACAGCCAAGTGGTAGTGGTACATGCCTTTAATCCCAGCACCGGAAAAGCAGAAGGAGATAGATCTCTGAGTTCAACACCAACCTGGGTCTGTGTAAGTTACAGGACAGCCAAGACTACACAGAGAAAACCCTGACTTAAAAAAAAACTAAAAATAAATAAATAATAGATAGATGATTGATAGATACATAGATAGATAGATAGATAGATAGATAGATAGATGATAGATAGATAGATAGATAGATAGATGCATATGTACATTCATGTGTACTTAGATACATCGATGATAGATAATTAGATGAATAAATGAATGAGGCCACAGCAGAGCATTCACATTAGAAATATAATTGGTAATTGGTAGAGGAAACATATTGACTTCTCATTGCTCCACCTACCATGGCTTACACCACTTTGTGTGTAGGAACATTGGGGTTCTGAGAGACTTAGGAGCCTTTCCTAATGATCCCTCACACTCCAGTGTAGAAACCCCTTCTCCCTAAGAGAACACAGCTGCACACTGGGTACTGAAGCAAGGCATCAGTGAGAGCTGCCCCCACGCCTGTGCTCTTCCCTCTCTCCTCTTCAG
Seq C2 exon
GGAAGCGATTCTGCTTGGGAGACAGCCTGGCTAAGATGGAGCTGTTCCTGTTCTTCACCACCATCTTGCAGAACTTCCGTTTCAAGTTCCCAAGGAAACTAGAAGATATCAATGAGTCCCCTACACCAGAGGGGTTTACCAGGATCATACCAAAGTACACCATGAGCTTCGTGCCCATCTGATTCTGGGTTGAGCCAAGATGGGTCAAGAGGGAGGGAGAGCCTGAAGTGGTGCTAGAAGGAAGGTGGAGTGAAGAGAGAAGATAAAGACCTGGGGATTAAGAAGGGACCACGTGCATGGAAGAAATAGAAAACACTACTCACCTTGATAAAATTGTAACAGTAATAATAAAAAGAAAGAAACACACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000060407:ENSMUST00000075552:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.3=100)
A:
NA
C2:
PF0006717=p450=PD(12.3=91.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACTTCCTGGATGACAAGGG
R:
CGTGGTCCCTTCTTAATCCCC
Band lengths:
355-1367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types