MmuINT0044764 @ mm9
Intron Retention
Gene
NA
Description
NA
Coordinates
chr7:27718498-27719335:-
Coord C1 exon
chr7:27719148-27719335
Coord A exon
chr7:27718640-27719147
Coord C2 exon
chr7:27718498-27718639
Length
508 bp
Sequences
Splice sites
5' ss Seq
AAGGTATAG
5' ss Score
7.98
3' ss Seq
CTCCATCTTCCCTCTTCCAGGGC
3' ss Score
11.59
Exon sequences
Seq C1 exon
CCAAGGTCCATGAGGAGATTGACCGAGTGATTGGCAGGAACCGACAGCCCCAATATGAGGACCATATGAAGATGCCCTACACCCAGGCTGTGATCCATGAGATCCAGAGATTTTCTAACTTTGCTCCCTTGGGCATTCCTCGAAGGATTACCAAGGATACTTCCTTCCGTGGCTTCTTCCTCCCCAAG
Seq A exon
GTATAGCCATGGACATCAGGAGGGGCCTTCAGCCCACTTCCTGATGCCTCAGGGCCCCTTTCCATCTACAGCTATCTAACTCCACTCTATTCCCCCAACTACTATGTCAGCCTCACCAGGGTCCTCTGATTAGACAAATTATTGTCACCTCTCCTAGACTTAGTGTCTCTGGAGATTTACATGTCCCCAACTTCTTGTTCCATCCTTTGAACTCCAAGTTCTATCTGCTCCTCTGCCTTGCTATCTTCCAATATCTCAACTCCTAAGCCAGAGGCAAAGGCCTGGTGTCACTCTAGCAGCCTGTCTCAGAACATGAACCCCATGGAGCTCAAATCTCCTACTCCTGGTGGCACACATCACATCACCTCAAAACTCATACTCCCTAATATCCCTTACTCAGGAGACCCCCAACTCTGTGCCTTTCAGATCTCTTCAGTTAGATCCTAACACCTTTTGTGGTCCTTTCTCCATTTAACCATCTTCTTAAACTCCATCTTCCCTCTTCCAG
Seq C2 exon
GGCACTGATGTGTTCCCTATAATGGGTTCTCTGATGATAGATCCAAAGTTCTTCTCTAGCCCCAAAGACTTCAACCCACAGCACTTCCTGGATGACAAGGGACAGTTGAAGAAGATCCCTGCTTTTCTGCCCTTTTCCATTG
VastDB Features
Vast-tools module Information
Secondary ID
-Cyp2a22:NM_001101467:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCCATGAGGAGATTGACCG
R:
CAATGGAAAAGGGCAGAAAAGCA
Band lengths:
326-834
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: