MmuINT0044840 @ mm9
Intron Retention
Gene
ENSMUSG00000042248 | Cyp2c37
Description
cytochrome P450, family 2. subfamily c, polypeptide 37 [Source:MGI Symbol;Acc:MGI:1306806]
Coordinates
chr19:40068541-40069100:+
Coord C1 exon
chr19:40068541-40068690
Coord A exon
chr19:40068691-40068939
Coord C2 exon
chr19:40068940-40069100
Length
249 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
ACTTGTTTCCAAATTTTCAGGCT
3' ss Score
7.81
Exon sequences
Seq C1 exon
GCCTTGCATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG
Seq A exon
GTAAGTGTAGGTTTAGAACCTGATCTAGGTATGGCAGTATGAGTGATTTTGTTCCTATCATATTTGAATTATTTTTTTCTAATGAGGTGTATAGGTCTCATGTTAATGTTCCAGTGAATGGCCAATCCATGCATTGCCATTAGCATAAATGGAGCATAGAATATATAAAGTATCTTAAAATGATAACAAGGGCAAGGTGTCTTCTATGTGTATTTTAATAATATTTTACACTTGTTTCCAAATTTTCAG
Seq C2 exon
GCTCACCCTGTGATCCCACCTTCATCCTGGGCTGTGCTCCTTGCAATGTCATCTGCTCAATTATTTTCCAGGATCGTTTTGATTATAAAGATCGGGATTTTCTTAACTTGATGGAAAAACTGAATGAAATAACAAAGATTCTGAGCAGCCCTTGGTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042248-Cyp2c37:NM_010001:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.9=100)
A:
NA
C2:
PF0006717=p450=FE(27.3=100),PF0006717=p450=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAAATGTATGGAAAAACACGAGG
R:
CAACCAAGGGCTGCTCAGAAT
Band lengths:
292-541
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: