HsaINT0044271 @ hg19
Intron Retention
Gene
ENSG00000138109 | CYP2C9
Description
cytochrome P450, family 2, subfamily C, polypeptide 9 [Source:HGNC Symbol;Acc:2623]
Coordinates
chr10:96701949-96707696:+
Coord C1 exon
chr10:96701949-96702098
Coord A exon
chr10:96702099-96707535
Coord C2 exon
chr10:96707536-96707696
Length
5437 bp
Sequences
Splice sites
5' ss Seq
AGGGTGGGT
5' ss Score
5.37
3' ss Seq
AATTGTTTCTAATTATTTAGCCT
3' ss Score
4.5
Exon sequences
Seq C1 exon
GAATTGTTTTCAGCAATGGAAAGAAATGGAAGGAGATCCGGCGTTTCTCCCTCATGACGCTGCGGAATTTTGGGATGGGGAAGAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCCCGCTGCCTTGTGGAGGAGTTGAGAAAAACCAAGG
Seq A exon
GTGGGTGACCCTACTCCATATCACTGACCTTACTGGACTACTATCTTCTCTACTGACATTCTTGGAAACATTTCAGGGGTGGCCATATCTTTCATTATGAGTCCTGGTTGTTAGCTCATGTGAAGCGGGGGTTTGAAGCTGAGAGCCAAGGGAATTTGCACATATTTGTGCTGTGTGTGTACAGGCATGATTGTGCGTACAGTGTGGGTATAAAAGGTTCATTTAATCCCATGTTCTCCTGAACTTTGCTTTTTTGCTTTCAAATAAGAAATGATGAATATAGATTTTGAGTTCATTTTTTGAAAGAGTTAAAGAGCAGTGTTTTTCCCATTACCTATTCCAGAACATGTCACCAGAGAATACTTGACAAGTCAACATGGTGGGAATGGCCCTATCATACCCATATGGAGCATGAACCAAATGGCATGTGCTTTTATTTAATTGGACTGTGTTTGTATGGTCAGCCTCACTGACTTCTCTGGGGTTTCTTTTAGGCCCGTGCTTGCCATTCTGGCCAGTAATGACATTCTACAGTTTTTATTGCTTAGGCATATCTTAGTGCAGTTCTCATCAATTATTATTTCTCTGTAAACACAGCATTATTTTAAAAATAGTATTAATTATTTCTTGTTACTGTATTGATTTATATATTTTCAGTAAATACATCCTGTAGCATAATTCTGTGAAATACCCAAATGTCAATTTATAAAATGATTTATTTAACAAGATTTTACTTATTAGTAATAACTCTGTAATCTGCATTCCCTATGTATGATTTGGCTCTGTTTCAGTTTTGCTTATCTCTTTCCAACCATATTTATGAAATTTTGGCTTAGAAATTTATGTTAATTATTTTTTTTCCATGGCCAACTCTACTCATCTATGAAGTTTTACAATGAATCTGTTTATCAGCTTGGATACCAAATTACCTTGTTTTTAAATTCTGTTTTCCCAATGAAGTTAAAGACTGAAAATCAGATTTATCTGTGAATGACACACACAAACTAACAGATTTCCAACTGTTCAATGCCTGGCCATTCATTCAGAGTACTTTTGATTAAAGTCACTATTTAGGGCCTATAGATATCAGGGGAAATTCAGCCCCTGATATTTCAATGTGAGTCCTTTTCTATTCTCCCTAAGTGTTGGCTGGTCTGAGAAATAAAGGGAAAGAGTACAAAAGAGAGAAATTTTAAAGCTGGGTGTCCAGGGGAGACATCACATGTCGGCAGGTTCCGTGATGCCCCCTAAACCACAAAACCAGCAAGTTTTCATTAGTGATTTTCAAAAGCGGAAGGAATGTGTGAATAGGGTGTGAGTCACAGAGATCACATGCTTCACAAGGTAATAAAATATCACAAGGCAAATGGAGGCAGGGTGAGATCACAGGACCGGAGTGAAATTAAAATTGCTAATGAAGTTTCAGGCACTCATTGTCATTGATAACATCTCATCAGGAGACAGGGTTTGAGAGAAGACAACCAGTCTGACCAAAATTTATTAGGCAGGAATTTCCTCTTCCTAATAAGCCTGGGAGCACTATGGGAGACCAGGCCTTATTTCATCCCTTATCTACAACTGTAAAAGACAGACGTTCTCAAAACAGCCATTTTAGAGACCACCCCTTGGGAATGCATTCTTCTCAGGGATGTTCCTTGCTGAGAAAAAGAATTCAGTGATATTTCTCCTACTTGCTTTTGAAAGAAGTGAAATATGGCTCTGTTCTGCTCAGCCCACAGGCAGCCAGACTTCAAGGTTATCTCACTTGTTCCCTGAACATCGCTGTTATCCTGTTTTTTTTTTCAAGGTGCAGATTTCATATTGTTTAAACAATTTGTGCAGTTAACACAATCATCACAGGGTCCTGAGGTGACATTCGTCCTCAGCTTAGGAAGATGATGGTATTAAGAGATTAAAGTAAAGACAGGCATAGGAAATCACAAGAGTATTGATTGGGGAAGTGGTAAGTGTCCATGAAATTTTCACAATTTATGTTCAGAGATTGCAGTAAAGACAGGTGTAAGAAATTATAAAAGAATGAATTTGGGGAACTAATAAATGTCTGTGAAATCTTCACAATTTATCTTCTTCTGCCATGGCTTCAGCTGGTCCCTCCGTTCGGGGTCCCTGACTTCCTGAAACATATAGATGTGAATTTGGGAGCTCTTTAACTATAAAGTTTAATATCTCAAAATAATAAGAGCTATTTATGACAAACCCATAGCCAATATCATATTGAATGGGCAAAAGCTGGAAGCATTCCCTTTGAAAACCAGCACAAGACAAGGATGCCCTCTCTCACCACTCTTATTCAACATAGTATTGGAAGTCCTGGCCAGAGCAATCAGTCAAGGGGGTATTCAAATGGGAAGAGAAGAAGTCAAATTGTCTCTGTTTGCAGGTGACATGACTGTATACTTAGAAACCCCATCATCTCAGCCCCAAAACTGTTTAAGCTGATAAGCAATTTCAGCAAGACCTCAGGATACAAAATCAATGTGCAAAAATAACAAGCATTCCTATAAACCAATAATAGACAAGCAGAGAGCCAAATCATGAGTGGACTCCCATTCACAATTGCTACAAAGGGAATAAAATGCCTACTTACACAACTTACAAGCGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTTCTCAAGGAAATAAGAGGTGACACAAATGGAAAAAAATTCCGTGCTCATGAATAGAAAGAATCAATACTGTGAAAATAGCCATACTGCCCAAAGTAATTCATAGATTCAATGCTATACCCGTCAAACTATCATTGACTTTCTTCACAGAACTAGAAAAGAATAATTTAAATTTCATATGAAGCAAAAAAAGAGCCTGTATAGCCAAGACAATCCTAAGCAAAAACAAAGCTGGAGGCATCATTCTACCTGACTTCAAACAATACTACAAGGCTACAGTAACCAAACAGCATGGTACTGGGAAAACTGGCTAGCCATATGCAGAAAACAGAAACTGGACCCTTTCCTTACACCTTATACAAAAATTAACTCAAGATGGATTAAACACTTAAACATAAAACCAAAAACCATAAAAACCCCAGAAGAAAACCTAGGCAATACCATTCAGGACATAGGCATGGGCCAAGAGTTTGTGACTAAAACACAAAAAGCAATGGCAACAAAAGCCAAAATTGACAAATGGGATCTAATTAAACTACAGTGCTTCTGCACAGCCAAAGAAACTGCATCAGAGTCAACAGGCAACCTACAGAATGGGAGAAATTTTTTGCAATCTATCCATCTGACAAAGGGCTAATATCCAGAATCCACAAAGAACTTAAATTTACAAGAAAAAAAGAAATATCCCCATCAAAAATGGACAAAGGATATGAACAGATGCTTCTCAAAAGAAGACATTTATGCAGCCAACAAACATATGGAAAAAAGCTTATCAACACTGGTCATTAGAGAATGCAAATCAAAACTACAATGAGATACCATCTCATGTCAGTTAGAATGGTGATCCTTACTAAGTCAGGAAACAACAGGTGTTGGTGAGAATGTTGAGAAATATGAACCCTCTTACACTGTTGGTAGGAGTGTAAATTAGTTCAACCATTGTGGAAGACAGTGTGGTGATTCCTTAAGGATCTAGAACTAGAAATTCCACTTGACTCAGCAATCCCATTACTGGGTATATGCCCAAAGGATTATAAACCATTCTACTATAATGACACACGCCCATGTATGTTTATGTGGCACCGTTCACAATAGCAAAGACTTGGAACCAACCCAAATGCCCATCAATGATGTACTGGATAAAGAAAATGTGGCACATATACACCATGGAATACTACACAGCCATAAAAAAGGATGAGTTCATGTCCTTTGCAGGAACATGGATGAAGCTGGAAATCATCATCCTCAGCAACTAACACAGGAACAGAAAACCAAACTCCACATGTTTGCACTCATAAATGGGAGTTGAACAATGAGAACACATGGACACAGGGAGGGGAACATCACACATGGGACCTGTTGGGGCACGGGGGGCCAGCAGGGGGACAGCATTAGGACAAATACCTAATGCGTGTGGGGCTTAAAACCTAGATGACAGGTTCATAGGTGCAGCAAACCACCATGGCACATGTATACCTCTGTAACAAACCTGCACGCTCTGCACATGTATCCTGGAACTTAAAGTAAAATAAAAGAAAATTTAAAAAATATAAAGTTTATCGATCACTTGATTATAACAACTTCATTTCAGAGATCCTCCACCAAACAAGAAAACTTTTCCTATAATTTAATTCATTTAGCTATTAAATGATACGCTGGGCCTAATCAATATCAAATTAAATAGGTTAAATTTGCAGGATGATTAGAGATGAGGGCATTTAGTTCCTAAAGAAGAAAATTCATTTTAAAAAAGGTACAGAAGAAAAAAACTCCACTTATCAATTTACACTTTCTTGTTTGCCTTACCTGGGATTTATATTTAAAATAAAAGTTTTTGGCCAGGCGCGGTGGCTCATGCCTGTAATCCCACAACTTTGGGAGGCCAAGGCTGGTGGATCATCTGAGGTTGGGAGTTCGAGACCAGCCTGACCAACATGGAGGAACCTGTCTCTACTAAATATACAAAATTAGCTGGATGTGGTGGCACATGCCTGTAATCCCAGCTACCTGGGAAGCTCAGGTGGAGAATCACTTGAACCTAGGAAGCAGAGGTTGTGGTGAGCTGAGATCGTGCCATTACACTCCAGCCCAGGCAACAAGAGTGAAACTCCATCTCAAAACAAACAAATAAACAAAAAACAACAACAACAAAAAACAACAACAAAGTTTTCATTTAATTTTTTAACAAACTAATCTATGTTAATTTGATATTAGTTTGTTAACATAACAAACTAATAATATGTTAGGCATATTATTCATTTATATTTGTTTTCCTTCTCATAAAACACATTCTGCTCTTACATTTATTTTCTTAAATACATGAATTCACCAACAGTCTCTTTGGTTCCTCTCTACTGGTTCAACACATGACTCTTTCAGCTATTCATTATATATAAAAAGCTTTGAAATCTCCAACTATTCTTGCCCTTTCCATCTCAGTGCCTTGCTGTCTACTGACTTTGCAGACTGATGTGATTCCCTCTGAAACATGAATTATTAGGTTTTTAGAAAATGCCTTTTTGTTCTTTCCAAAGTAAAAGACAAATAGGCTGGGAATGTAAATTTAGCATTTGAACAACCATTATTTAACCAGCTAGGTTGTAATGGTCAACTCAGGATTAATGTAAAAGTGAAGTGTTGATTTTATGCATGCCGAACTCTTTTTTGCTGTTAAGGGAATTTGTAGGTAAGATAATTTCTAAACTACTATTATCTGTTAACAAATACAGTGTTTTATATCTAAAGTTTAATAGTATTTTAAATTGTTTCTAATTATTTAG
Seq C2 exon
CCTCACCCTGTGATCCCACTTTCATCCTGGGCTGTGCTCCCTGCAATGTGATCTGCTCCATTATTTTCCATAAACGTTTTGATTATAAAGATCAGCAATTTCTTAACTTAATGGAAAAGTTGAATGAAAACATCAAGATTTTGAGCAGCCCCTGGATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000138109-CYP2C9:NM_000771:3
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.9=100)
A:
NA
C2:
PF0006717=p450=FE(11.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)