MmuINT0044852 @ mm9
Intron Retention
Gene
ENSMUSG00000032808 | Cyp2c38
Description
cytochrome P450, family 2, subfamily c, polypeptide 38 [Source:MGI Symbol;Acc:MGI:1306819]
Coordinates
chr19:39466639-39476283:-
Coord C1 exon
chr19:39476096-39476283
Coord A exon
chr19:39466781-39476095
Coord C2 exon
chr19:39466639-39466780
Length
9315 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
TTCTCTATGTATTATTCTAGGGA
3' ss Score
8.52
Exon sequences
Seq C1 exon
CTAAAGTCCAAGAAGAGATTGACCATGTGGTTGGTAGACACCGTAGCCCCTGCATGCAGGACAGGAGCCGCATGCCCTATACTGATGCCATGATTCATGAGGTCCAGAGATTCATCAACCTTGTCCCTAACAACCTACCCCATGCAGTGACCTGTGACATTAAATTCAGAAACTACATCATCCCCAAG
Seq A exon
GTAAGCTTGTCTTGCTGCTGCACCCTTGTGCTCTTGATGATCCCAGGTTAACAGTTGGGTTCCAGTCCTCTGATATACATTGTGGTACAGGTGATTTATTTCGCTTTATGGTTCAGAGGGCAGATCTACTGCTGGTTCAGATATATCTTGTATTGACACTTCTGATATTTGCTCAGCCTTCCAAATACTGTTAGGCAAAGCTTAGGAATTTATGTGTAAATGTTTCAATGTTTTGTAAATTTTCCAAATGCCTTCTATGAAATTTTTATTATTGTTAGAGTAAAAGTTTCCAAACTGGAAAGAATTGATATCCTGAATTATTTAACTTTTTAATAATGTTATATCATTCATTCATTTATTGGGGATTTTTATTTTCTCTATGCCATGTTTCTTTTCAATAATGAAGCCCATAAATAGCTTCTTAGAAATGTCCTGAATGGTGAATATCTTTTTGTTATTATTTCTCTATTGTCTTTGTCATTCTTTCTGTTTAATGGAAACAAATATTCATTTATTCTAATTTTATCTTTACCTTATTTGTTGCTTCTCATGATATGAACATAAATGTATATGTAATTTGAAGATGTTATGTGAGCCAATTCTTTTCTAGGTATTTTTGTATCCTTTTGTTATCAGTGTGATGAATTGTTGATAGTGATGAGCAGACTGCTTCCAACAGGCATGGCTTATTTCATTACTCATTTGGATGAAGGAACATAATTTTAACATTTCACTATCAAATTTAGTGGTATAGGAATACACAGTCTTGTTGATCAGTTGAACATTTTTAGTCTGATTTAAGGGAATAAAAGACAATCCCAGAACCCATTTTATATGAACATGACCAAGATATACAGATATTTACTTTGAGCTGATAAATTATATTCATAAGAGTCTGTAGATTATTTTGAAAGATGTTTTCAGCACTCATTTTAATAGCCTTATATATTATTTAATCTTTTATCACTGACTGTGTATGTTTGAAGCATATATGTATACTGAATATTTTCTGCCACATATTGCCTATGGCTCTTACGTATTGCCTATGGCTCTTACATATTGCCTATGGATCTGCAACCCTATAGGTGGAACAACATTATGAACTAACCAGTACCCCGGAGCTCTTGTCTCTAGCTGCATATTTATCAAAAGATGGCCTAGATGGCCATCACTGGAAAGAGAGGCCCATTGGACTTGCAAACTTTATACGTCCCAGTACAGGGGAACGCCAGGGCCAAAAAGGGGGAGTGGGTGGGTAGGGGAGTGTGGGGGGTGGGTATGGGGGACTTTTGGGATAGCATTGGAAATGTAAATGAGGAAAATACCTAATAAAAATTTTTAAAAACTAAGATGAATATATTCCCCTATATGGTTCTGTTTTCACTTATTTAATTTTTGTGGGCATTTAGTCTTACTTTCAAGACACTGTAAAACTTCTGATTGAGTATGTACAGATGAAAATGCCAAATTTTTATAGGGATAACTTCATCCAGAAAAGGCTCTATGCTATCTCCTAGGCAGCCTCATATTTTTCAGGAGTTGGTGAAAAAAGATTCTGATAGAGTTACATTCATTAACATTGTGTGGAGATGATGGTATGTGGCAATGAGACTTGCTCTGTAATGACAGGCTTGGTATAGTGTTAGGATACCAGTTTGCTCTTGTTACCTGAATGATATTCTTGAGATAATACTTTTGCTTCTGACAGATGAGGTCTATAGCTAATATTCAAAACTTGTGTATGATTATGGCCGTAGACCCATCTAAATGGTAAATTGAATGAAGGACAAGATAGTAATGACATATCTCCCCATAAATTCCTTGTGCTCATAGCCTAGTTTGAGGCTAACTTATAACCCCTCATATTGCTGCTGGCTCACGATATGATTAGAATAGAGTCCTTAGTAGAAATAACAGGATAAAAAGGAAATGGCTTTCTTTGCCATATTTAGCCTGGTAGATTTCAGGCATCCTAGGCCATGAGGATTGTGATGAGTAGCAGAGGAGTTATCGTATTCAGCATGTAAAGAAATGATTATACATAAAATATGTCCTATTCTATTGAGACTAGAATTTATTTTCACATAATAAATATATGTTAATACTAGTGTTTTTAGTTTTAAATTTGAAACATACTTAGTTAAGCTGCATTCTAATACATGTGACAGACTTGTGAAAATTTTGAAAAGAACATTTCTAGGAAGCTTCAATAGCATGAGGTCAATTTGTGTTTTAGGTGAAGAGAAATTGCATGTACCAGCTTCCAAAAATTTCTGTTTATCTTCAGAAGTTTTATGATTCAGATACCACCAGGTCATGAGTATTACAACTTACACTTTGTCTTTTAAGTTTCATTTTAGTTTCTCTTTCTATTACCCTTTTTATTTCTTCCTTTCCTTTTTCCAAATATTCCTCATCCTACTTTCCTGCATAAATATATGCATATGTATACACACAGACATATATATTCATATATATTTCTGTATTTGTGTATCTTTGTATTCACATAGATGTATAAATTACACTTATGACATCACACCTCTACTCTGGCACATACTACCTTATTTACATTCTTATCATATAAATACAGAGATAGATGGAGCAATAGATAGATTCTGTACATGAGAAAAAAGTGGTATGTGTCTTTACAAATATTCCTTATTGTGCTTAATGAATATTTTATTACATTTAAAAGTCTTCATGAATTATTCCAGTTGGAGGCTGATTAATCTGAGGTGTATAGATTCAGATGTGATTATCTAGAACAGCCGGTGTTAAGAGAATGGTGAGTTCAATCTGTAGGAAGGAGAGAGAAGAGAAACAGAAATTTTCATTCAACTACTCATGTGAAATGTCACTGTAAGGCACTTCGGTCACATCAATATGACTGGCCTCAGACTCCTTCCCAACCCCCCTTCACAGTTTTGCATTTAAAAGTCTCTGCTACTTGGTTCTGGGACTCAGCAGAACTTAGGAAATTAGTCTGAACAGGTTAGAGGGTGCGCCAGAGAACCGGACAGCTTCTGGGACGGGCAGAAGCACAGAGCCGCTGAGGCAGCACCCTTGGCGGGCCGCAGACAGCCGGCCACCGTCCGGACCAGAGGACAGGTGTCCGCCTGGCTCGGGAGGCGGCCTCAGCCTCAGGAGCAGCGGTCGCCAACTTGGTTCCAGGACTCCCTGGAACTTAGGAATTTAGTCTGCACAGGTGAGAGTCTGCACCACAGAAGCTGACAGCCTCTGGGAACTGCCAAAGCAACACAGCTTCTGAGAGAGGCCCTGTTTTGGGCCTTCTTCTTCGACCAAGAGGAGGTCCAAAAACAAGATATCTGCGCACCTTCCCTGTAAGAGAGCTTGCCAGCAGAGAGTGCTCTGAGCACTGAAACTCAGAGGAGAGAATCTGTCTCCCAGGTCTGCTGAGAGACAGTAACAGAATCACCAGAAGAACAATCTCTAAACAGAGTCAACTATAACTACTAACTCCAGAGATTACCAGATGGCGAAAGGTAAACGTAGGAATCCTACTAACAGGAACCAAGACCACTCACCATCATCAGAACCCAGCACTCCCACTTCGCCCAGTCCAGGACACCCCAACACACCCGAAAACCTAGACCTAGATTTAAAAGCATATCTAATGATGATGGTAGAGGACATCAAGAAGGACTTTAATAAATCACTTAAAGAAATACAGGAGAACACTGCTAAAGAGTTACAAGTCCTTAAAGAAAAACAGGAAAACACAATCAAACAGGTAGAAGTCCTTACAGAAAAAGAGGAGAAAACATGCAAACAGGTGATGGAAATGAACAAAACCATACTAGACCTAAAAAGGGAAGTAGAAACAATAAAGAAAACTCAAAGTGAGGCAACACTGGAGATAGAAACCCTAGGAAAGAAATCTGGAACCATAGATTTGAGCATCAGCAACAGAATACAAGAGATGGAAGAGAGAATCTCAGGTGCAGAAGATTCCATAGAGAACATCGGCACAACAATCAAAGAAAATGGAAAATGCAAAAAGATCCTAACTCAAAATATCCAGGAAATCCAGGACACAATGAGAAGACCAAACCTATGGATAATAGGAGTGGATGAGAATGAAGATTTTCAACTCAAAGGACCAGCAAACATCTTCAACAAGATTATTGAAGAAAACTTCCCAAATCTAAAGAAAGAGATACCCATGAACATACAAGAAGCCTACAGAACTCCAAAGAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACAACAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATACAAAGGCAAGCCTATCAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAAATTCCAGCCCAGGCTACTATACCCAGCCAAACTCTCAATTACCATAGATGGAGAAACCAAAGTATTCCACGACAAAACCAAATTCACACATTATCTCTCCACGAATCCAGCCCTTCAAAGGTTAATAACAGAAAAAAACCAATACAAGAACAGGAACAATGCCCTAGAAAAAACAAGAAGGTAATCCCTCAACAAACCTAAAAGAAGACAGCCACAAGAACAGAATGCCAACTTTAACAACAAAAATAAAAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAACATCAATGGTCTCAACTCCCCAATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGTTTACAGGAGACACATCTCAGAGAAAAAGATAGACACTACCTCAGAATAAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCTGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAACCCAAAGTCATCAAAAAAGACAAGGAGGGGCACTTTGTTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGGGCAACCACATTCATTAAAGAAACTTTAGTAAAGCTCAAAGCACACATGGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCACCAATGGACAGATCATGGAAACAGAAAATAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAAACAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAAAAAATAACAGAAAGCCAACACTCACGTGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCATGAAGAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAGAGGGCACAGAGACAAAATCCTAATTAACAAAGTCAGAACTGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATAACAGGTACCAAAGTTGAATCAGTATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATAAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAAGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCACTATATAAACAAACTCAAAGACAAAAACCACAGGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACACCAAACCAGGAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAAAATAGTACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATACAAATTGGAAAGAAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCCACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTGAAGTAGCTGGATATAAAATAAACTCAAACAAGTCAATGGCCTTTCTCTACACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGTCACAAATAATATAAAATATCTTGGCGTGACTCTAACTAAGGAAGTGAAAGATCTGTATGATAAAAACTTCAAGTCTCTGAAGAAAGAAATTAAAGAAGATCTCAGAAGATGGAAAGATCTCCCATGCTCATGGATTGGCAGGATCAACATTGTAAAAATGGCTATCTTGCCAAAAGCAATCTACAGGTTCAATGCAATCCCCATCAAAATTCCAACTCAATTCTTCAGCGAATTAGAAGGAGCAATTTGCAAATTCATCTGAAATAACAAAAAACCTAGGATAGCAAAAACTCTTCTCAAGGATAAAAGAACCTCTGGTGGAATCACCATGCTTTACCTAAAGCTTTACTACAGAGCAATTGTGGTAAAAACTGCATGGTACTGGTATAGAGACAGACAAGTAGACCAATGGAATAGAATTGAAGACCCAGAAATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAATGCGAATCGATCCATACTTATCTCCTTGTACTAAGGTCAAATCTAAATGGATCAAAGAACTTCACATAAAACCAGAGACACTGAAACTTATAGAGGATAAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGGAAAAAATCCTGAACAGAACAGCAATGGCTTGTGCTGTAAGATCGAGAATTGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAGACCACTAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAACTGAACAAAGAATTCTCACCTGAGGAATATCGAATGGCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGTCTAAGATCAAAAATTCAGGTGACAGAAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCCGACTGGCGGATCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGGCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCAAAACCTAGGATACCCAAGATATAAAATACTATTTCCTAAACACATGAAACTCAAGAAAAATGAAGACTGAAGTGTGGACACTATGCCCCTCCTTAGAAGTGGGAACAAAACACCCTTGGAAGGAGTTACAGAGACAAAGTTTGGAGCTGAGATGAAAGGATGGACCATGTAGAGACTGCCTTATCCAGGGATCCACCCCATAATCAGCATCCAAACGCTGACACCATTGCATACACTAGCAAGATTGTTTTGAAAGGACCCAGATGTAGCTGTCTCTTGTGATACTATGCCGGGGCCTAGCAAACACAGAAGTGGATGCCCACAGTCAGCTAATGGATGGATCACAGGGCTCCCAATGGAGGAGCTAGAGAAAGTAGCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGATCAACATTATGAACTAACCAGTACCCCGGAGCTCTTGACTCTAGCTGCATATGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATTGGACACACAAACTTTATATGCCCCAGAACAGGGGAACTCCAGGGCCAAAAAGGGGGAGTGGGCGGTTAGGGGAGTGGGGGTGGGTGGGTATGGGGGACTTTTGGTATAGCATTGGAAATGTAAATGAGCTAAATACCTAATAAAAAATGGAAAGAAAAAAAAGTCTCTGCTATTCTTTGTAGTTAACTCCTTCTATAGAGCAGGAGGTGAATTAAGTTATTTTCCTGGCATAGTTTAGTTTTATGGAGTTTTTTGTTTTCTTTTTGTTTTTTTGTAACTTGGTTTCTCTATGTATTATTCTAG
Seq C2 exon
GGAACAACAGTAGTAACGTCACTGACATCAGTTCTGCATGACAGCAAGGAGTTCCCCAACCCAGAGATGTTTGACCCTGGCCACTTTCTAGACGCTAATGGAAACTTTAAGAAAAGTGACTACTTCATGACTTTCTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032808-Cyp2c38:NM_010002:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.032 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.5=100)
A:
NA
C2:
PF0006717=p450=FE(10.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: