DreINT0054251 @ danRer10
Intron Retention
Gene
ENSDARG00000098995 | cyp2k6
Description
cytochrome P450, family 2, subfamily K, polypeptide 6 [Source:ZFIN;Acc:ZDB-GENE-040426-1571]
Coordinates
chr3:12673180-12674122:+
Coord C1 exon
chr3:12673180-12673364
Coord A exon
chr3:12673365-12673980
Coord C2 exon
chr3:12673981-12674122
Length
616 bp
Sequences
Splice sites
5' ss Seq
AAGGTCTGT
5' ss Score
6.43
3' ss Seq
GCATCTGATGTTTTGTGCAGGGC
3' ss Score
6.99
Exon sequences
Seq C1 exon
CCAAGGTTCAAGATGAGATTGAACGAGTGATCGGTGGACGTCAGCCAGTTGTAGAGGACAGGAAAAACTTACCATATACAGATGCTGTGATCCATGAAATTCAAAGATTTGCAGACATTTCACCCATCGGTGCCCCCCGTCAGACCACATGCGATGTTCATCTGAACGGATATTTCATCAAAAAG
Seq A exon
GTCTGTATACAATAGGAACTTAAGGTGTTAATTAATATGTTTAGGTCAACTTTGTGTTCTCCAGAGGGAAATTTATTTCACATAAGGCAGTAAGAAGCCAATAACAATATCTACCGATGAGGCTGTGATCATTTACACAGTGCATACGGAAAGTTTTCATAGCGCTTCACTTTTCCACATTTGTTTATGTTACAGCCTTATTCCAAAATGAATTTAATTCATTTATTTCCTCAAAATTACACACAATACCGCATAATGACAATGTGACAAAAGAGTTTTTGAAATTGTTAAAAACTTTTATAAAAATAAAAAACCTGAAAAATCACATGTACATCAGTATTCACAGCCTTTGCTCAATACTTTTTTGATGCACCTTTGGCAGCAATTACAGCCTTAAGTCTTTTTGAATATGATGCCACAAGCTTGTCACACAAACTTCTACCTTATTAACTAATAATAAATAGCTAATTAGTAATTAATTGAGCTAAAGTCGCAGTTAATGGTTTGTTAATAGCGTGAATTGGACAATAAATGAAGAGTGACCATAATAAAAGTGATGTCCACATTTTGTTGTGTTTGCACTATTTATAACTGATGCATCTGATGTTTTGTGCAG
Seq C2 exon
GGCACCCCTGTGTTCCCACTACTGGTCTCTGTGTTGAGGGATGAAAATGAGTGGGAAACGCCTGACAGCTTTAACCCAAAACACTTTCTAAATAAACAGGGACAGTTTGTGAAAAAGGACGCCTTCATGCCCTTCGGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098995:ENSDART00000170788:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.062
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.3=100)
A:
NA
C2:
PF0006717=p450=FE(10.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGAGATTGAACGAGTGATCGG
R:
GAAGGGCATGAAGGCGTCC
Band lengths:
310-926
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]