RnoINT0044424 @ rn6
Intron Retention
Gene
ENSRNOG00000028891 | Cyp2t1
Description
cytochrome P450, family 2, subfamily t, polypeptide 1 [Source:RGD Symbol;Acc:620086]
Coordinates
chr1:83968537-83969087:+
Coord C1 exon
chr1:83968537-83968724
Coord A exon
chr1:83968725-83968945
Coord C2 exon
chr1:83968946-83969087
Length
221 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCAC
5' ss Score
4.22
3' ss Seq
CACGTCTGTGTGTCCTCCAGGGC
3' ss Score
11.07
Exon sequences
Seq C1 exon
CCAAGGTGCAAGAGGAGCTGGACGCCACTGTAGGCCGGACCCGTGCCCCTAGCCTAGCAGACCGTGCCCACCTGCCCTACACCAATGCGGTGCTGCATGAGATCCAGCGCTTCATCAGCGTGCTACCACTGGGACTGCCTCGGGCCCTCATCCGAGACGTAAACCTCAGGAACCATTTCCTGCACAAG
Seq A exon
GTGCACAGGGAGCCTGGGAATTCTGCACTGGGAGGAAGGGGAAGGGCTAACACTATCAGTACCTTGGGGGCTCCTCTCCCAGGCTCCAACTATCACCTTAGGGGCTGGGGTGCAGCTATGTGAGAGCACTTGCCCAGCACCTGCAGGCCCTGCGTTAGGTGCCAACAGCAACAGAAAGGTTCTGGGTGAGGAGCCAGCACTCACGTCTGTGTGTCCTCCAG
Seq C2 exon
GGCACCTTCGTCATTCCCTTGCTTGTGTCTGCACATCGGGATCCCACCCAATTCAAGGACCCTGACCATTTCAATCCCACCAATTTCCTGGATGACCAGGGCGAGTTCCAGAACAACGACGCCTTCATGCCCTTTGCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028891:ENSRNOT00000068322:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.063 A=NA C2=0.167
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.6=100)
A:
NA
C2:
PF0006717=p450=FE(10.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGGTGCAAGAGGAGCTGG
R:
GTTGTTCTGGAACTCGCCCTG
Band lengths:
304-525
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]