MmuINT0044874 @ mm10
Intron Retention
Gene
ENSMUSG00000025197 | Cyp2c44
Description
cytochrome P450, family 2, subfamily c, polypeptide 44 [Source:MGI Symbol;Acc:MGI:1888897]
Coordinates
chr19:44013576-44015080:-
Coord C1 exon
chr19:44014904-44015080
Coord A exon
chr19:44013718-44014903
Coord C2 exon
chr19:44013576-44013717
Length
1186 bp
Sequences
Splice sites
5' ss Seq
GAGGTATAG
5' ss Score
7.13
3' ss Seq
CATAACTCTCCCACCTGCAGGAG
3' ss Score
10.07
Exon sequences
Seq C1 exon
ATGTACAACCTATGGCCGACGATCATGAAGTACATACCTGGAAAGCATAGAGAATTCTCAAAAAGGCTTGGTGGTGTTAAAAACTTCATCCTAGAAAAAGTGAAGGAGCACCAGGAGTCCCTGGACCCCGCCAACCCTCGGGATTACATCGACTGTTTCCTCAGCAAGATCGAGGAG
Seq A exon
GTATAGGACTTGGGGGTGGGGCTCTTTTCTTGATGTATTTTAGCCCCCCCCCCGAAGATGCAGGAGAGTGGTCACATATGAAGGTAGTTGTTATAATCCTGGTACTGTATGGATTGCTGGATAAAGGATTTGACACACATACACTGTAAATAAACTGTAAGTAACGTTAGGCATACCAATAATGGCTGCTGGTGCGTAGCACTGGTACTTGGAACACTACTGAACAGAGCTCCAAACTCTGGAATTTAGCACTGTGCACGTTTAGAGTCCCCCAGCTAAGCCGAGCAGTGGTGGTGCACACCTTTAAGCCCAGCACTTGGGAGGCAGAAGCAGGTGGATCTCTGAGTTAGAGGCCAAGCTTGGCCTATACAGTGAGTTCCAGGGCAGCTAAGACTATACAGAGAAATCTGGATGCCAAAATAAAAACAAAAAGAGTGCACCAGCCAGCTACATAAATGAGAGGAAAATGCCAGTTGACCCTATCCTTAGTGCGCATTATTTCTACAATAATAAGCTCTGGCATGCATAGCCAGGTTCCCTTGAGGAGATGTCTGAGAAGAGAATGCTGTACATGCCACTGCCCCGAGCGAGTTCTCTGAGTTAATGAGGCCTTTATACTTTCTTCAGTTACCAAAGAGGTCCACCGCAAGGGCCTAGTCATTCCGATGAATGTCAGGGGACTGTAATCTCTGGGAAAAAGAAAACTATCAAGGTGTGGTGGTACACACCTTTAATCTCAGCACTCACAAGGCAAAGGTAGTTAAATCTGAGTTTGAGGCCAGTCTGGTCTACAGAGCAAACAAGGGCTACTAACAATGGTGTTACAGAAGAGCCACACAGCTGGGTAGAAAAAAAAAGGAAGCTGGCCAGTCATGCAGTGACCTTCCTACACCGGGCTCAAACAGAGCTTATCAAACTAGTCTCTTTCATTAAGTACTGCCCGAGAGCTTATCATTCGCCAAGTGTTTGTGTATGTGGGGTGTTGCTCTGAGAGCTTCCTGCCCATTCTGTGTCCTGGCTAACCTGAGATTCGAGCCCAGACAATTCAGCTTCGTGACTTACGGCTCTATTCCAATAGGACAGGACACTAAAGGGACCTTGGAAAGAGTGGATCTTGCGTGGTGGGATTTGAAGAGACGTTTGCCTCCTCTTTAGCTCACAGAGCCCATAACTCTCCCACCTGCAG
Seq C2 exon
GAGAAACACAACCTGAAATCTGATTTTAATCTGGAGAATTTGGCCATCTGTGGGTCTAACTTGTTTACGGCAGGCACAGAGACAACCAGCACCACCCTGAGATTCGGGCTTCTGCTCCTTGTCAAGCATCCAGAGGTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025197:ENSMUST00000026211:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.7=100)
A:
NA
C2:
PF0006717=p450=FE(10.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTACAACCTATGGCCGACGA
R:
CTTGCACCTCTGGATGCTTGA
Band lengths:
318-1504
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types