MmuINT0044900 @ mm9
Intron Retention
Gene
ENSMUSG00000025002 | Cyp2c55
Description
cytochrome P450, family 2, subfamily c, polypeptide 55 [Source:MGI Symbol;Acc:MGI:1919332]
Coordinates
chr19:39081509-39085672:+
Coord C1 exon
chr19:39081509-39081703
Coord A exon
chr19:39081704-39085509
Coord C2 exon
chr19:39085510-39085672
Length
3806 bp
Sequences
Splice sites
5' ss Seq
TATGTAAGT
5' ss Score
6.69
3' ss Seq
AATTTCTTTCTTATTTGCAGTTC
3' ss Score
8.33
Exon sequences
Seq C1 exon
GAGTCTCCCTGAGAAGAGAAAGCTGCCATGGATCCAGTCCTGGTCCTGGTGCTCACTCTCTCCTGTCTGCTTCTCCTCTCCCTCTGGAGACAAAACTCTGGGAGAGGGAAGCTCCCTCCTGGCCCCACCCCTTTCCCAATTATTGGAAACATCCTTCAGATAGATATAAAGAACATCAGCAAATCCTTCAACTAT
Seq A exon
GTAAGTATCCTTCTTGCTATATAGTGGTTGAAAAGTAAGAATTATTCTCTGCTGTTAAATAAGTACATTTCTGGGGTTAAACTATATCATCATATGGCAAATGTGCACTGTGGATTTTCACATTTGGTTTCTCATTGTAGAAATGATTAAGAGAGATAACATATTTGTCCAGGATAATCATTTTTACACTGTAAGGTAAAATCCATATAGCAGAGAGAACAGTGACTCTTTCACTGTTTCATGATTCTTAGCTGCAATTTTTGCATAAGATAAAAAGTATTGGAATTATTTTTAGTATTTACTGGAGACATCATCTACGTACATGTTGCGTATTATCTTTAGGTTAGCTAACCAAAATAATTACATTTCTTCAAGGAAACAAGTTATGTCTGATATCAAGGAGTCCGAGTCAACATAAACTTATGTGAAAGAAAGAGAACTAGTAAGGTCCAGTGGGGCCTCAGTGTTTCTGTGCAAAGCTGCTGCCAGAGCTGTGGATGAGCAGCATGTAAGAGATTGTCCTGGCTGAGATGAAAGGATGGACCATGTAGAGACTGCCATATCCAGGGATCCACCCCATAATCAGCATCCAAACGCTGACACCATTGCATACACTAGCAAGATTTTATCGAAAGGACCCAGATGTAGCTGTCTCTTGTGAGACTATGCCGGGGCCTAGCAAACACAGAAGTGGATGCTCACAGTCAGCTAATGGATGGATCACAGGGCTCCCAATGGAGGAGCTAGAGAAAGAACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGAACAACATTATGAACTAACCAGTGCCCCGGAGCTCTTGACTCTAGCTGCATATGTATCAAAAGATGGCCTAGTCGGCCATGACTGGAAAGAGAGGCCCATTGGACACGCAAATTTTATATGCCCCAGTACAGGGGAGCGCCAGGGCCAAAAAGGGGGAGTGGGTGGGTAGGGGAGTGGGGGTGGGTGGGTATGGGGGACTTTTGGTATAGCATTGGAAATGTAAATGAGTTAAATACCTAATAAAAAATGGAAAAAATAAATAAATAAATAAATAGAACACTGAAAATTCAAAAAAAAAAAAAAAAAAAGAGAGAGATTGTCCTGTGGGATGCTGCATGTGCTGTTCTGCCTGCTGCCTGTTCTTTAGTCACTTATATCAGGATTGCAGACAGCCTGGCATCACACTCAACTAGAGAGAGATTTCTCTGATTTTAGTAATATGACAATATTTTAAAATTAATTAATTAATTAACATCCCAAATGCTACCCTGTTCTCGGTCCCTGATGACAGAATTCCTCCCCCATGCTCCCTCCCATTTACTTCTGAAAGGGTGCCCCCCACCCCCAGGTATACCCTCACCCTGGTGCGTCCTCTCCCATGGTGGCCAGACAAGGCAGCCCTGTGCTACATATGTGCCTGGGCCACTGACTGGTATATGCTCTTTGGTTGGTGTCTCAGTCTCTGGGAGCTTCCAGGGGTCCAGGTTAGTTGACACTGTTGGTCTTCCTGTGCGGTTGCCATCTCCTTCAGGACCTTCAATCGTTCCCTTAGCTCGTCCATAGGGGTCTCTGACCTCAATCCAATGCTTGGCTGTAAGTACTTGCATCTGTCTCAGTCAGCTGCTAGGAGAGACTCTCAAGTTATATTAGGCACCTGTCAGCAAGCACAACATAGTATCACTAATAGTGTCAGAGATTGATGCCTGTTCATAGGATGGGTCTCATGTTGGGTCAGTCTCTGTTTGGCCATTTCGTCAGTCTCTGCTGCATTTTTTTGTCCCTGCATTTCTTTTAGATAGGACCAATTCTGAGTCAAAAATTTTGAAGGTGGGTTGGTGTCCCCATTCCTCCACTGGGGGTCCTGTCTGTTTCCTGGAGGTGATTGTCCCACTGTTGGGCATTTCAGCTAAGGTCACCCACATTGACTCCTGGCAGCTTCCTAGGGAGAGTTTTCAAATGATAAGTTTTCAGTACTTATCATAGGGTGACCGAGTGACCCTGTGAGAAGAGCTCAGCAGAATCCTGAAGCAAAGTCCTTCAGAGTTAAGTATTTGTTTCAGTGTGGACACAGGGGACTGGTTTGTGCTAGTCTGCTAGCTTGAAGTCGAACAGCTTCTGAGGGGGAAGTGAGCATGATTATAGGAAAGCAGAAAAAAGATTCAAAGTTAAGATTTAGAATTGGAAGGGCTGCAGCTCAATATCCCACCAGCCTTGAGGCAAGTTTGTTTTCCTTAGCCTTTGTATACTTCACAGTACCATGGGAAACATAGCCACAAGCTAACAGAAATAATTGCTGAAATATAAGATATCTGTCCCCATCCAAAAGACTCCCTATTCCTTCCACCAAGGTCAATACAATAGAATTTTCAGCTTCTCACTGTGAGCCTTAAATATTCCTGCTGTTATCATTCTATTCCTTATCAGGTCAGAAAATCTGTAGGGTTGTGAGCCCAAGTCCACTCCACCCTTGGGCATAGTTGCTTGGGGAGGCCCATGCTACCTTCAGGCTGTAGGGAAGCACTGAGATACCACTCTGGGGGTGGGAACTCTGGGGGTGGGAAAGTGCAGTCTGAGGCATGGGAAAGCTGGAGCTGGTTTGGGGGTCCCGGGCCTGCTATGGCTGGGGCTGTGGGGTTCTCAGGCTCTTGGACATCCAGGCACCACTGAGAGTTGCAGAAGAACAGAGAACAGAGTTGGGGGTTCATAGGCTGCATCTAGCCTGGGGTCGGGATGGGGTGAGGAGAGTTATGAGAACCTCTGGCTGGTCCCAGCAGCGATAGTTCTTGGCTGTATGGCGATCATGGCTGGGAGTGCAGATTGGTCTTCTAGGGGAGACTAACTGAGGCTCTATAGGTGAAGACATTCTCCATGGCTCCGCACAATGGATCTCAATGAAAAGAGACAGTCTTGGTAGATAATGAGTGCATAAAACCATACCCCACTTCTCAGGGTGGGCCTGAGATCAAAATACCTTTTGCAGGGAGGATTGTCTGGGAAGAGAAGCTTTGGCAATGCCTGGGCATCTAGGTACTGCATTAGCACGAAGAACTCTGTTTTGAGCCTACTTGACTGTGGTCATGGCTCTTTTCCTTTTGTGTTGGTCTGAGATGTTAGGGATGCCTCATCTACATATGGAAGGGCTTAGGGTACTGCCCTTACATGGCTAATAGTCACAAATCTATGGGTGGCTGTTGATACATGAGTTGGGCCTTGTGCTGGGAACCGGTGAAGCTCCTACCATCCCGTCAGGGTCTCTAGTGATGCAAGCCTTTAGCTTCAGCTTACCAGACTTCCTCCTCTCATGATCCACCACTCTGTAGAAATCTGCCAACAGACCCTGATCCACTTTGACTCTGCCTAGCAGGTGGAGTTTTCTGTTTTCTTTTTTTCTTTTTCTCTCTCTGCTTCAGAGAAGTGACAAAAGGCTTCCCACACTGGTTCGTTGCCCAAGTATCAGAGATTCACTGAAAAGGGTTTCAAATCTGAGTGTTGAATTTTTACCCACGGAAAAGTTAAATGAATTTGAGATTCTTCATCCTCAGTGTCTTTATCTGTAAGTTTACAGATTAACTTCCTTCAAAGTGTCACAGTTCGGACAATTTGCACATTGGTTTGTCTGGAAATCTACTGGTAAACAAGATACATGCTGCATATGAAAGTTATAGCAAACAGCTTTTTATGTATCGAATCTAAATTTGAAGTTGTGATTGGCAGACTACAGATGTGGACAGTAAGATGCTCATATCAGCCTAGAATCTTCTTCTGTTACTTATAATTTCTTTCTTATTTGCAG
Seq C2 exon
TTCTCAAAAGTCTATGGCCCCGTGTTCACTCTGTACTTTGGTTCAAAGCCTACTGTGGTGGTACATGGATATGAAGCAGTAAAGGAAGCTCTGGATGACCTTGGAGAGGAGTTTTCTGGGAGGGGTAGTTTTCAAATTTTTGAAAGAATAAATAATGATCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025002-Cyp2c55:NM_028089:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(5.7=46.4)
A:
NA
C2:
PF0006717=p450=FE(11.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: