Special

MmuINT0044929 @ mm9

Intron Retention

Gene
Description
cytochrome P450, family 2, subfamily c, polypeptide 67 [Source:MGI Symbol;Acc:MGI:3612288]
Coordinates
chr19:39691792-39700752:-
Coord C1 exon
chr19:39700611-39700752
Coord A exon
chr19:39691980-39700610
Coord C2 exon
chr19:39691792-39691979
Length
8631 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TTGTCATTACTTGTATCCAGCTA
3' ss Score
4.36
Exon sequences
Seq C1 exon
GAAAAAGGCATTGAGCACATGGAATATACCATTGAACACCTGGCAACATTGGTGACTGATCTGGTTTTTGGTGGGACAGAGTCCTTAAGCTCAACAATGAGATTTGCTCTCCTGCTCTTGATGAAGCACACACACATCACAG
Seq A exon
GTAAGAATACAGGTAATGAAGCACAGCATTCATAAAAGTTGCTAGGGCAATGCAGATTGTGTCCTGCCCATTGTTATTCAAAATGTCAGTATTCAACTTTCTGTCCCATTGGCTTTAATGAAAATGTTGACTAAGTAAATGAAGATACCTGAGCAGTTGAAAAGCCATCAAGGCCAGTACTTTGTTTGAGTTCTCTGGAAGGTGATCTGTTCTAAGCATCTAGAGCATATATTGGGCCATGGTTGCATTATGCTTCTTCCTCCAATTCGAGCCTTCATAGCAGATGAATTCTCGCAGTTGCTTTCTTCATTGTGATAAATCTAGTTCTGGGGTACATAAAAGAAAACTCAGCTCACTAAAGCATAAAATAAGGTCCAATATTTAAAGCAATTTCCTCAGATTTTATTTTTCTGTGAAGCATTTTACATCTTTTTTTTCCATTATAATTGTATTGCCCTTGATGTCAAGGTTATGGTGTCAAATTTAGAGAATAGAGAGTTTTATCATGTTCTATAAAATGTCTGATGAGCCCATGCCATATGGGTTTGATCTCAGTAGAGGCCCCCAAGGTCCCCAGAGGGCTCTCCACACTACAGTCACCCTAGCACACCCTGGATCTTAAGATCACTGGTGAGTGGAATGCAACATCAGTTCCAAAAAACCCAGAGGGTTTTGTGGTAGCAGGAACAGGGACAAAGAACACCTGCCTGATCAGTGGCTGGTGTTCGTTTTAGTCCATGCCACCCCTGTGCCATCTTGGGTACAATCTCGGCAGAGGGTCCCAAGGTCCCCAGAGGAGTCTGCACACTGCAGGCACTCTAGCACTACCGGGACCTTGAGATCACTGGTGAGTGGAACACAGCATAGTTAAAAAAAACCCAGAGGGTCTTGTGCTAGCAGCAATAGGGTCAAAGGACAAAGGCAGGCCCTAGCACAGCCAGAACCTTGGGATCACTGAGACCAGTCTACTCAGGAGAGCACATGGGCAGCAGAAGTAACAAAGCTTCTTGGACATGGTCCATTTGGGCCTTCATCCTCAGTCAGGAGACAGAGCTGAGACCCAGACCATTGGACACATTCCGTGACAGAAGAGCGTCGGCCTCCAGGGAGCTCTCTGACCTTAGGAATCAGGAGGTGGATCTGAGCTCCAGAATTCTGTGTACCTTCCCTGAAAGAGGAGAGCTTGCCTGAAGAGAGTGTTCTGTGCCTGGGACACAGGAGGAGTTGTTCTCACAGGAGTGCTGACAGAAGCTAGAGAATCACTGGAGGAACAACTTCCGGCCAGAGACAGCTAGAACATCCAACACCAGAGATTACCACATGGTGAAAGGCAAATGAAAAAAATCTTACTAAAAGAAAACCAAGACCACTGGGCATCATCAGAAAACTTTACACACACCACAGTGAGCCCTGGATACTCCAACACATCTGAAAAGCAAGATTTGGATCTAAAATCATATCTCATGATGCTGGTAGAGGATTTTAAGAAGGGCATGCATAAATCACTTAAAGAAATATAAGAGAACACTAGGAAAAGTAAACAGGTAGACGCCCTTAAAGAGGAAGCACAAAAATCAATGAAGGAATTACATGAAAACACTGTGAAGCAGGTAGAAGACTTTAAAGAGGAAACACAAAATCCCTTAAAGAATTACAGGAAAACACAACCAAACAGGTGATGGAATTGAACAAAACCATCTAAGATCTAAAAGTGGAAGTAGAAAAGATGAAAACCCAAAGGGAGACAACTCTGGAGATAGAAACGCTAGGAAAGAAATCAGGAAGCACAGATGTGAGCCTCAGCAACAAAATACAAGAGATGGAAGAGAGAATTTCAGATGAAGAAGATTCCATAAAGAACATAGACACAACAATCAAAGAAAATGCAAAATGTAAAATGATCCTAAGCCAAAAACTTCCGGGAAATTCAAGACTTAAAGAGAAAACCAAACCTACCAATAATTAAATAAGATGAAAATGAAGATTTTCAACTTAAAGGGCCAGCAAATATCTTCATCAAAATTATAGAAGAAAACTTCCCTAACCTAAAGAAAGAGATGCCCATGAACATACAATAAGTCTACAGAACTCCAAATAGACTGGAAGAGAAAAGAAATTCCTCCTGACACATAATTATCAGAACAACAAATGCCCTAAATAAAGATAGAATATTGAAAGCACTAAGGGAAAAAAGTCAAGTAACATATAAAGGCAGACATATTAGAATTACACCAGATTTCTCATGAGAGAGTATGAAAGCAGAAGATCCTGGACAGATGTTATACAGACCCTAAAAGAACACACATGCCAGTCCAGGCTACTATACCCAGCAAAACTCTCAATTACCATAGATGGAGAAACCAATGTATTCCATGACAAAACCAAATTCACACAATATCTTTCCATGAATCCAACTCTTCAGAGGATAATAATGGAAAAATACCAAAGAATGATGGAAACTACACTCCAGAAAAAGCAAAAAAGTAATCCTTCAACAAATCTAAAAGAAGACATCCGCAAGAACAGAATCCAAACTATAACAACAAAAATAACACAAAGCAACAATTACTTTTCTTTAATATCTCTTAATATCAATGGGATCAATCCCCAAATAAAAACAGACTGTTACATAAACAGGACCCAACCTTTTGGTGCTTACAAAAAGCCCACCTAAGGGAAAAAGACAGGAACTACCTCAGGGTAAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTCTGATGAAACAAGCTGGAGTAGCCATTCTAATATCCAATAAACTTGACTTCCAAACCAAAGTTATCAAAAAAAAAAAAAAAAAAGACAAGAAGGGGCACTAATACTCATCAAAGGTAAAATCTTCTAAGATGATCTCTCAATTCTGAATATCTATGTTCCAAATGCAAGGGCAGCCACAATTATTAAAGAAACTATAGGAAAGCTCAAAGCACATATTGTACCTCACACAATAATAGTGGGAGACTTTAACACCCCACTCTCATCAATGGACAGATCCTGGATACAGAAACTAAACAGAGACATATTGAAACTAACAGAAGTTATGAAATGAATAGATTTAACAGATATCTACAGAACATTTTATCCTATAACTTCTTCTCAGCAACTCATGGATCCTTCTCCAAAATCAACCATATAATAGGTTTCAAAACAGGCCTCAACAGATATAAAAATGTTCCCATTATCCCAAGCATTCTATCAGATCACCATGGACTAAGGCTTATCTTCAATAAGAATATAAATAATAGAAAGTCAATATTCACGTGGAAGCCGAAGAACACTCTACTCAATGATACCTTGGTGAAGGAAGAAATGAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCAGAACATACCCAAACTTATAAGACACACTGAAAGCACTCATAAGAGGAAAACTCATAAGTCTGAGTGCCTCCAAAAAGAAGCTAGAGAGAACATATTCTAGCAGCTTGACAGCACACCTAAAAGCTCTAGAACAAAAGGATGCAAATTCACCCAAGAGAAGTAGATGACAGGAAATAATCAAACTTGGAGCTGAAATCAACCAAGCGGAAACAAAAAGAACCATTTAAAGAATCAACCAAACCAGGAGCTTGGTTCAACAAGATAGATAAACCCTTAGTCAGACTCACTAGAGGGCACAGGGACAGTATCCTAATTAACGAAATCAAAAATGAAAAGGGAGACATAACAACAGAACCTGAGGAAATCCAAAACACCATCAGATCCTACTATAAAAGGGTATATTCAACAAAACTGGAAAACCTGGATGAAATGTACAAATTTCTAGAGAGATTCCAGTTAACAAAGTTAAATCTAGATCATATTAATGACCAAAACAGTCTGATATCCCCTGAAGAAATAGAAGCAATCAGTAATAGTCTCCCAACCAAAAACAAGCCCAGAACCAGATGGGTTTAGTGCAGAATTTTATCAGTCCTTCAAAGAAGACATAATTCCAGCTCTCCCCAAACTTTTCCACAAAATAGAAACAGACGATACTCTACCAAATTCATTGTTTGAAGCCACAATTACTCTGATACCTAAACCACATAAATACCCAACAAAAAGAGAGGACTTCAGACCAATTTCCGTTATGAATATTGATATAAAATTACTCAATAAAATTCTCGCTAACTGAATGCAAGAACACATCAAAATAATCATCCATCATGATCAAGTAAGCTTCATTCCAGGGATGCAGGGTCAAGTCTTCGTGGATCAATGAACTCCACATAAAAGCAGAGTCACTGAAACTTTTAGAGAAGAAAGTGGAAAAAAGCCTTGAAGATATGGGCACAGGGGAAAAATTCCTGAACAGAACAGCAATGGCTTGTACTGCAAGATCGAGATTTGGTACCTCATAAAATTGCAAAGCTCTTATAAGGCAAAAGACACTGTCAATAAGATAAGAAGGCCACCGTCAGATTTGGAAAGTATCTTTACAAATCTGAAATCTGAAAAGGGACTAATATCCAATGTATAAAAAGAACTCCAGAAGATGAACTCCAGGTAATCAAATAACCCTGTTTAAAACGTGGTACTGAGCTAAACAAAGAATTCTCACCTGAGAAATACTGAATGGCTGAGAAACACCTGAAAAAAAGTTCAACATCCTTAATCATCAGAGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGGAGATGTTGGCGAGGATGTGGAGAAAGAGAAACACTCCTCCATTGTTGGTGGGATTGCAAGCTGGTACAACCACTCTGGAAATCAGTCTGGCAGTTCCTCAGAAAACTGGACATAGTACTACCGGCAGATCCGGCAATGTGTCTCCTGGGCATCTACCCAGAAGAAATTCCAACTGGTGATAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATATCCAAAAGGTGGAAAGTACCCAGATTTCCCTTAACAGAGCAATGGATACAGAAAATGTTGTACATTTACAAAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGGCAAATGGATGGACCTGGAGGGCATCATCCTGACTGAGGTTACCCAATCACTAAAGAACTCACATGATATGTACTCACTGATAAGTGGATATTAGCCCAGAATCTTAGAATACCCAAGATACAAGATGCAATTTGCAAAACACATTAAACTCAAGAAGAAGGAAGACCAAAGTGTGGATACTTTGCCCCTTCTTAGAATTGGGAACAAAACACCAATGGAAGGACTTGCAGAGACAAAGTTTGGAGCTGAGAGGAAAGGATGGACCATCTAGAGACTGCCATACAGGGGATCATCCCATAATCAGCCTCCATACACTGACACCATTGCATACACCAGCAAGATTTTGTTGAAAGGCCCTGGTATAGCTGTGTCTTGTGAGGCTATGCCAGGGCCTGGCAAACACAGAAGTGGAAGCTCACAGTCAGCTAATGGATGGAACACAGGGTCCCCAATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGGTCTGCAACTCTATAGGTGGAACAACAATATGAACTAACCAGTACCCCTGGAGTTCGTGTCTCTAGCTGAATATGTATCTGTAGATGGCCTAGTTGGCCATCATTGGGAAGATAGGCCCCATGGTCTTGCAAACTTTATATGCCTTAGTAGAGGGGAACGACAGGGCCAAGAAATGGGAGTGGGGGGCAAGGGGATTCGGGCGGGGGGAGGGAATGGGGAACTTTTGGGATAGCATTTGAAATGTAAATGAAGAAAATACCTAATTAAGAAATAGAATGAAGAAAAAATAAGCTTTCTTTGTATAAATTTCAAAACAAAACAATGAATTCATGAAATTCTTAGGAAAATGGATGCATCTGGAGGATATCATTCTGAGTGAGGTAATCCAGTCACAAAAAACACAGGTTATGTACTCACTGATAAGCGGATATTGCCCAGAAACTTAGGATATCCAAGATTCAATTTGGAAAACACATGAAACTGATGAAGAAGAAGAAAGACCAAAATCTGGATACTTCATTCCTTCTTCGAATAAGGAACAAAATACCCATGGAAGAGTTACAGAGACAAAGTTTGAAACTAACATGGAAGGAAAGACCAACCAGAGACTGCCCCACCGAGGATCCATCCCATATACAACCACCAAACCCAGACACTATTGAATATGCAAGAAAGTTTTTGCTAACAGGACCATGACATAGCTTTCTGTTGTGAGTCTATGCCAATGCCTGGCAAAGAGAAGTGGATGCTCAGTCTTCTATAGTCTTCTATTGGATAGAACACAGTGCCCCTAATGAAGGAGCTAGAGAAAGTACCCAAGGATCTAAAGGGGTCTCCAACCCTATAGGAGGAACAATGATATGAACTAATCAGTATCCCCCAGAGCTATGTATCCAGTTGCATATGTAGCAGAGGATGGCCTAGTCGGCCATCAATGGGAGGAGAGGCCCTTGGTATTGCAAAGATCATATGCCCCAATACAGGGGAATGGCAGAGTCAGGAAGCAGGAGTGTGTGTGTTGGGGAGCAGGATGGCGTGACAGTATAGGGGGCTCAGGGGATAGCATTTGAAATGTAAATGAAGAAATTGTCTAATAAAAAAAAGTCTGATGAACAATATTTTTGCAAATATACCAAAATTTCATGTTATAAATAACATTATTGTAAAATTTTATTTTTAAATAGAACCAGGTGTTTCACATTAATGAAACATGCCTTCCATCCTTTTCCAATATCCACTGAAATGACAATAGCAGAATTATAAGACAGAATTTGTTGATTTAGACTAGCAAATAAAGACAACAGTAAACAACACAATCCTTCATAATACAAGAATAATACAATCATCATAGGGGCAGGGGCGAGATCCTGTAAGATTATTACGGTTATATACTTGAAGAATTGCTATGGAATAGCAAATACATATTGTGCCTCACTTGGGTCTCTAAGTGTCCCTTTTTGTATCTAATAATTTTAAGTAGAAAATCAGGTTGGGAACCAGAGGCTGTTCTGCCCACTATTCTCTTAATTACTTCCCCCTTCTTGTGAGAGTTTCCAACACATAAATCTTAGAAATTCTTTTAAAATTGAAAGAAATCCATGTGTAAAGAACATTGAATGGTTGACACAGGAAGAATAATAAAGAGGATGAAAGTAGAAAACTGGCAATGTTGAATAGTCTCAGAGCTCTTTCCACCCTTTCATGGGTATCAACAACTGAATCTACCACCCAGATTGTATTGTACTATAAACATCTCTGTGTTTTGCAAAGACATATTTTCCAAATAGCCATCAGAAATAACACTATAAAGACCAGGAAGTAAGGAATGGAATGAAAGCACAAAGATTTTCAGGTTTATTCCCAATACGCATTAAAATAGTGCTACTACACCAGCTTTCTCAAGAGTACCTGGTGATTATCTAATGCGTAGAAAAGAAAAAATGTAAAGATAGATCTTCAATTGTAAATTTTGCTCCCTATTCTGCTTTCTTTATGAAACCCTGTAGGAAGTTTTCCATTTAACTGTCTAAAGTAACTTTCCACAAAGCAATTTACTCCAGATACCTTCATGAGCAAAGTCTACACTTTCACAGAGTGTGCTGGGTACTAGAAGTAGAAAGCCTCAGATTTGGGATTGACTTGGGAGTTGCTTCAGGAATGAACAGAGCATGAGGGAAAACACAGATGTACTGTGTCTTCTCATGTCTTCATTCAGTGCACATTTATTGTAGGAGCTGAAACATCCACTGAAATACTTGGAAGTAAGTATAAATCATGAAAGAGACAATTAAAAACTAAAGTGAACAGTATGCATTAATCAAAAAGTATATCAATAATTTAGACAAACTCTTATATTGGAAATAGGGAATCATATTTATATATCTCTTTCCACAATTTGTCTATATTACCAAGTATGATAATCTACGAATGATGCATGTGTGGGCATTCACATGTATATGGTATGTGTGTGTGTTCATTATCTACTCGTATTTGTAAATAGGATATAGATATAACTGATATGTTCTTTTCTGCTACCAATATCTCAATAAATATTGTATATGATTGAGTACATAAAACAGTTATTGTTTAAAATACAAATATATTTCTAAGTAGTTGTTGGTGATGAACCTGATCACTGATAGTTAAGATAGGGAGAATAAAATTTCAAAAAGACCTTCAGATACATAATTTTAAAATCAGTACTACAAATATTCACCATTATAATAACTTATTTCTGATATCTTTTATTAATGTCAATATTGCCAAATTAATTGTACTCTGTTTTATTGTTGTCAATAATTATTTTATCTCATAGTATTTGATACTCTGGATAAAAACAATTAGCATATAATAGTGAATCATATTAGCTATGTTGTAGGATGATGGTATTAAGGTATATTAGAATAATCCTATGTATCTAAGTTTATTCCTCAGCATAAAATGTATGTTCAAAATGTTTCTGGGCCACTTTCTTCATGGCCTAGGTAGCTGTGCATTTATGGGAGATACAGGCTACATTTTTCCCATTCCAATATTTGTCATTACTTGTATCCAG
Seq C2 exon
CTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAACCATATGCCTTACACAAATGCCATGGTGCATGAGGTCCAACGATATGTTGACCTTGGCCCAATTAGTTTGGTGCATGAAGTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000062624-Cyp2c67:NM_001024719:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact

No protein impact description available

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.016
Domain overlap (PFAM):

C1:
PF0006717=p450=FE(10.3=100)
A:
NA
C2:
PF0006717=p450=FE(13.5=100)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
LOW PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development