HsaINT0044266 @ hg19
Intron Retention
Gene
ENSG00000138115 | CYP2C8
Description
cytochrome P450, family 2, subfamily C, polypeptide 8 [Source:HGNC Symbol;Acc:2622]
Coordinates
chr10:96802647-96805708:-
Coord C1 exon
chr10:96805567-96805708
Coord A exon
chr10:96802835-96805566
Coord C2 exon
chr10:96802647-96802834
Length
2732 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
TCTTTCTTGTGTCTTGTCAGCTA
3' ss Score
8.64
Exon sequences
Seq C1 exon
GAAAAGGACAACCAAAAGTCAGAATTCAATATTGAAAACTTGGTTGGCACTGTAGCTGATCTATTTGTTGCTGGAACAGAGACAACAAGCACCACTCTGAGATATGGACTCCTGCTCCTGCTGAAGCACCCAGAGGTCACAG
Seq A exon
GTAGGACCACAGATGATGAACAAAGTGAATTTCAGAACAATGCTGAGAAGATGGTGCCAGTATCCTCCACCTTGTTTCTCTCAGAGAAGGCTCATTCTTTAAATTTCTGTGTCATCAGCTGTAATCTGTCTAAATTTGATGACACAATTTAAAATGACATCTTTGTACAATGGAGGAGGATGACAGAGATCAGTAGAAACAGTATGGCAGTAGCAAAATAAGTAAAGCACTGATGAAGTGTCTGGATTTCAGCAAAGGTAATTTGTGGTAAGGAGAGCCAGCATAAATTGCCCTAGTATTGAATGTTGGTTTTATTATGAAAAGTCCACTTTGAACAGTAGGTTCATTTCTCATTTTAAAAATTCCATGCTCTAATGCTGTGGTGGGGAGATGAAAACAATCTTTATTGAAGCATAAGTGGAAATTCTAGAATTGTACTGAGGCATCCTGACATAAATTCCAGTCTGGGAAGTAATCTAAAAGTTAGTCTCTTACAAAGGTGTTTCTATTTAAGCAGAGGCCATACCTAAAGGAATTTTATTATTCTAGGAGTGTGTTTCATAAAAATGCTATTTGACCAAATAGGGACATTTGGAAGGGGGTTTAATAATTGCATCTTTCACATACAACTTTTCTTTAGAATTTACAATTTACCCTTAGAGTAAACTCTACATTTCCTTAGAATTTACATTTAAATAGTTCCTGCTTTGCAGCAGATAACATACCTTTTTCCCTGTGTCAGGATCCCACTGAAATTTCAATAACTAAATTACAAATTAAAATTATCCTGCTGAAGTGAAAAGAGAGGAGAATAGAAAATAGCCAATAAGTCTTTGGCAAATTTCTAAAACATGGAGAGACAATGGAGGGCTGACAATTGACACAGCATAGAGGATGGAGTTGTAAGTATTAGCAGAGGAAGATTTATCAAGAGGAGAAGCTAATCTGTGTCACTGTGATTCTCATAAGGTTCAGTATTTGGAGGCACCAAGAGCCAAAGACAGTAGGGAATGAGACTGAAAAGGGAGGCTCTCCTGCCCAAGTTTCCTCCATAACTCCTTTTATCAGGTACCTGATTTTTTCCCACTGGGAAAGGGAAGCATACTCTCCAGAGAGACTGAGCCTAAGAACCCCTGTACTCGGCGACACTTTACAGGGCCAGGAAACTGTGAGATGTGAAGACAGAAAAAAAAAAGGTTTGAGAAAGATCTATTCCTCAGATTCAAAGACTCAGCATTTTTCTTCATCTTGCTTCCTGACATTCAGCAGCCAGCTAGATACTCTCCAGAGAAGAAACAAGTCTGGAGAAAAGACCTCCGTATTTTGCCAACTTAATAGAAAGTTATCTATAAATGTCCAGCAGAGTGAATGAAATTAAAACATCCATCACAGGACACAAAGTCATGGAATTTCAGAGCACCAGAAGTAAAGGGAAAATTAAAATCTTTCAGAGAGTTATATCAGGTCATATATAAAATATCAGCATTCAAACAGCATCAGAATTCTCAAGCATACTATCTTGTGTATTCATAGAAAAAAAGTATTTGGGACCTACATGGTTGCTACAAATTTTACCCTCTATACTAAGTTTCTCCAATACTGGGGGTTGTGCTCCATCTCATGTCTGAAACTAAGTCAGAAGAAATAATGGGTGCCAGGAATCAGGAGACCTCATGTAAGAGAATGAGAGTGTCAGAGAGGCTGCTGTGCTCCTAGGAAACAACCACTTCAGAAGGGACCAGGTGAATAATACATGTAGAGGAGACTTCAAGAATCAAAGAGATGTGATTGATAGTCTGAGATTTCCCTATAATTGGGAAATTATTACTAGGAGTTTCAAACATGTGCAAATACTCTAACTTGAAGAATAGAAAATTGTGATTTAACTAAAGAACCAAGGAAGAATGTGTATGTGTGTATATGTGTGTGTGTGTGTGTGTGTGTGCTTCTGTGAGTATATTTAGAATGATGTAAACAATGAATAGTGATATAACCAGAAATTGTGGTCTAAATATATTCTGGTAAGTAGAAGGAGGAGAATTGTGTGTGTGTACGTGTGTGGGTGTGTCTGTGTGTACACATATAACTTTGTGGGCGTGTGTCTATATATGGAATAGAGATGGAGATGAAAATTCTCATCTCTCATACCAGAAAATCATTAAATATTGTCTAAAAATTGTTAAGTAAAAAATAGAAAGAAATAGTGGTTATTTAGAAATACAAATATAAATTTCAGAAGAAACTGCTAGCATGCTCAAAGTGGCCACAATTGGAAATGGAAGAATGAAGACAGTACCATTGCTAATTGCATCACTGCCCCTGCTCCACCACCGCACACACAAATATATTTATAAAACCATTACAATTTAACATTATACCCCATATATTATTTTGATAATACATATTTGATTGTTTTTCTGTTTGCAAGCACTGTAATTTATTGACTTATTATGTTCTGTTTATTTTTTAAATAATGTATTACTTAAATTTGTATTGTCATATATGCTAATTTATAGAAATGTACTTATGCACTGTAATGACTAGTTTGTAGGAGAGTGGTATGTATCTATATTATGGTAATTCTTTTTATATGGCTGGTTGTACTTCTGGACATGTAACTCATGTTTGTAATGTTGCTGGGATTTTTATATCATGTTAATGTGGCCATGAATTGCTATGACAAATGTTCCATATATCTTCGTTTCCATCAGTTCTTTCTTGTGTCTTGTCAG
Seq C2 exon
CTAAAGTCCAGGAAGAGATTGATCATGTAATTGGCAGACACAGGAGCCCCTGCATGCAGGATAGGAGCCACATGCCTTACACTGATGCTGTAGTGCACGAGATCCAGAGATACAGTGACCTTGTCCCCACCGGTGTGCCCCATGCAGTGACCACTGATACTAAGTTCAGAAACTACCTCATCCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000138115-CYP2C8:NM_000770:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.103
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.3=100)
A:
NA
C2:
PF0006717=p450=FE(13.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)