MmuINT0044930 @ mm9
Intron Retention
Gene
ENSMUSG00000062624 | Cyp2c67
Description
cytochrome P450, family 2, subfamily c, polypeptide 67 [Source:MGI Symbol;Acc:MGI:3612288]
Coordinates
chr19:39690110-39691979:-
Coord C1 exon
chr19:39691792-39691979
Coord A exon
chr19:39690252-39691791
Coord C2 exon
chr19:39690110-39690251
Length
1540 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
TTGTTGTTTGTTGTTTGCAGGGA
3' ss Score
9.93
Exon sequences
Seq C1 exon
CTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAACCATATGCCTTACACAAATGCCATGGTGCATGAGGTCCAACGATATGTTGACCTTGGCCCAATTAGTTTGGTGCATGAAGTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAG
Seq A exon
GTAAGCTTGTTTTTCCCTGTTACACTTCTGTGCTTTTGATGTTCCCTGTTTCAGTGTGATTCCAGTCCTCTCCATCACACTTTCTTTCTTTGCTTATGCTGGTTCACCACTGAGAAAGAAGCTATAATGAGGCAGGGACATGGTAGTAGCAATCTGACATTTGCTTTGTCTTCCACAGATCATTTGAATAAAGATTGGTTGGTTATATTCTCATATATATTTTTCAATTAGAGTTGGATTCAACCAATACGTTTTGGAATTTTAATTATTGAGAGAAAAAACTACAAATAACTAGAAGTAGTTTATATGCTTAATTCTTCAACTTATGAAAAGGCCATATTATACTTTAACTTGTATGGTTTACTTTAGTCATATTAATTTTCTTTCAATGATACAGCTTGTATCTAGCTTTTGAGGTTTACTGAGCAATGAATATTCTTTCATTATTTTTTTTAAATATGGTGTATAGAAATGAATTATTATGTGATTTTTATTTTACCTATCCTCATATATTTTACTAGTTACTGATGCTTTCTTTGAAAATATATGCAGAATTCAAGGTGGTTTCTGGTTAACATTTTATCTATACTTTTGTTTTCATATATTTGTATTTCATTACCATTTAAGTTATTACTGATCCATTAAATATTATAGATGAATTTCAGAAGCCAGTAATTTGTACAGCTATTAATTTCTAAATTCGTTAAAATAAAATTTTTATAGAAGTAATTCAGGACATTTGGAATATGTGTGCAATCAAAAAATAGAAAGGACTTCAGAAACTTAAAATGTAAATTATTATACTAAAAATTCATGGATTCTCTCGAGAAATAATGAGTTTGACATAAATCTTATAAAGTAAAGAAGACTGAATGAATAGAAACAACTGATATATAGGCATATTCATGTCACTTATGGTTAATATAACTGTAACATTTCTCTGTCAATTTCCAAGACTTTAGATGATTTGGAAAATGATTTTATTAGATTAAGTTGTAGTCAAAGGATAAAAACAATTAGCATATAATAATGGATCATATTAGCTATGTTAAAGGATGATGGTATAAATCTATATTAGAATAATTCTATGTATCTAAGTTTTTAGAAAAAGAAGCACCTAGGTATATAATCACACTAAACCTGAAAAATAGCACCTAAATATATAATCATACCAAATCCATGTGCCTAGATGCCAGGATAAGAACAAAATCAATAGCCAAAGCATTATTTCACTATTAGACCAGAACTAGGCTACTGCAGAAAGCTTGGAATACTCTAGTGCAGTTAAAGCACAAGAAAAAGACCTCAGTATCAACATTATGAGGAAGGCAGAAGATCTTAAAGAAGTGACTAAATTCCTTAGAGAAATTGTGGAAAAGACAAACAAAAAGTTGGAGGAAATAAATAACCTGTGACAAAGGACAAGAATAACACCTCCCAAGTACCATTCTTTGTACTTCCTCTATGGAGGAGAAGGAGAACAATGTTCAGCACCCTGAGACATTCATACATTGCTTTCTTTGTTGTTTGTTGTTTGCAG
Seq C2 exon
GGAACACAGGTAATGACATCACTGACATCAGTGCTGCATGACAGCACGGAGTTCCCCAACCCAGAGGTGTTTGACCCTGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTCGTGCCTTTCTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000062624-Cyp2c67:NM_001024719:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.5=100)
A:
NA
C2:
PF0006717=p450=FE(10.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCCAGGAAGAGATTGACAATGTG
R:
CTGCTGAGAAAGGCACGAAGTA
Band lengths:
326-1866
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: