HsaINT0044267 @ hg38
Intron Retention
Gene
ENSG00000138115 | CYP2C8
Description
cytochrome P450 family 2 subfamily C member 8 [Source:HGNC Symbol;Acc:HGNC:2622]
Coordinates
chr10:95038897-95043077:-
Coord C1 exon
chr10:95042890-95043077
Coord A exon
chr10:95039039-95042889
Coord C2 exon
chr10:95038897-95039038
Length
3851 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
ATCTGTTTTGTTACTTCCAGGGC
3' ss Score
9.83
Exon sequences
Seq C1 exon
CTAAAGTCCAGGAAGAGATTGATCATGTAATTGGCAGACACAGGAGCCCCTGCATGCAGGATAGGAGCCACATGCCTTACACTGATGCTGTAGTGCACGAGATCCAGAGATACAGTGACCTTGTCCCCACCGGTGTGCCCCATGCAGTGACCACTGATACTAAGTTCAGAAACTACCTCATCCCCAAG
Seq A exon
GTAAGCTTGTTTCTCTTACACTATATTTCTGTACTTCTGAAATTTCCATAGTGCTGGTTTGGTTCCAACCCTCTAACAACACAAGATGAGAGAAGTGCAAAACTCATACATGTGGCAGCTTGATGGACTTTCTGCTATTTTGTTTGGGGCTATAAAGATTTATAAAGCTAGGTCTCCTTAATAGGCTGCTCTTAGGTGTTACACTTTCAAATAATTGTTGAAAATATCAGTGTGTCAATTTCCCAAAACACTCTTCTGAGATTTTTATCAAAGTGACATTCATTGTGTAGTTCGATATGGAAAGACTTAACATGTTCATGCATTGAATTTTTTAATTCATGAATATGGTTATGCTCCCAACTTATTGAGCTTTATTCTATTTTCTCAGTAATGTCTTATTTTCAGTGCAGTGGTTTACAACTCTTTTATTAGGTTTTTCCTAGATAATTAATATTTTGTTGTGTTATAATTTTTTAATTTTTTTTTATTTCTTTGTAATTGGTATAAGTAATTGTATTCAATTATACTATTCTGATGACCTTATATCTAACAACTTTCCTAAATTTACTGATCATTGCTGATAATTTATCTGTAGATATACTTGGAATTTCTATGTATATTATTTTGCTATCTGGGTTAATATGTATTTTATATCTTATTTTCCAATGATTTTGTCTTCAATTTATCTTTATTGCATTATTGTGCTGGCTAGGATTTTCAGGTTAGCATTGAACAGAATTGGTGATAGAGGGCATCCTTATTTCATTTCTGATCTGCTGGGGGGTAGAGTATAAGAATATTAATATTTCACTACTGAGAATGATGTTTTAAGTATTTTTTTAAAATAATTGACTTTTATTTAACTTCATTTATAAAAGAATTTTCACGAATATGGTTTGAAATGATACTCTACATTTGTTATGAAACAGATAGTTGGTATTTTCATAAAATCCCAGCCCCCAGAAGGCTCATGTCATTCCAAGTGATCAGACTCCTGTACCTTCCCTAAATAAGGCTAGCAAACTGGGGATGGCAGGGAGCAGAGCCCAGAGCACCTTGGTAGTTTTGCACAGATTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGCTGGACTGCGGACTGCAGTGGCGCAATCTCGGCTCACTGCAAGCTCCGCTTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCCCGCCACCGCGCCCGGCTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCTTGTTAGCCAGGATGGTCTCGATCTCCTGACCTCATGATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGACTACAGGCGTGAGCCACCGCGCCCGGCCTTGCACAGATTTTTTAAAAGCCAGTAACTTCCTTCTGGCTGTTCTAAAAGACAAACACTTTGGAGAAAAGTTGTGCAGTAAGGGAAACTATCAAAAATCATTCTCATAGAACAGTAAGGCAGTGAGGCAAACACGATCTCCCTCATGATTTTAAAGTCTGTAATAGAAATTAACAGTGTCATCTGCAGCCCAATTATGCACTTTAAGATCCCAAAAAATTGCTGCTGTTTTAAGTATTTTAGTAGATATTCTTTATCAGAAATCTTTAAGATTTTAGTAGATATCCTTTATCAGATTAGGGAAGTTTTTTCTCTTCTCTCATTTTTATATAAATTTGTGTCATGAATGTGTGTGCAATTTTATCAAATTGATTCTCTGCATCTATTTATATGATTGTATATACTGGCCTCACATCCCTCACTAAATATACATAAGTATACACAAACAGCTGGATTTGTTCTGTTACTTATTGTTCAGGACTTCTGTATTCATAAGATATTTTGGTCTGCAATTTTTCTTCCTCAAAATTTTCTTTTCAGAGCTTTGATAACAAGATAATGCTGGCTGCATAAAACTAGGTGAGAAACGTTCCCTAATGTGGGTCTGTTTTTATTGCTTTCCCTTCCTTCCACTTTTCTTCGTGTGACTGCTTAGTTGTATCCTTGAAATGCCTAAAAACCTATGGCTCAGTACCAGATATTATATATGAAAAAATGCAGAATTTCAGAGAACATTTATCTTTTTCCAGAATGTATTCATTCCCCTCTCATAGGCAATTATAATGACAACACCTCCTGTCCTGATTCAGAATTGAATATGACATGAACACAGTCAAAAATTGACTGTAGGTATGAGCTTACCTCTCTGAAGTTCTTCCGTCACTGGGGCCAATTATTGTCTTTATAATCTGGAGGCCAATTTTGGTCTTTGCAGCTTTACAATGCTGTCTATCACATGGTTTCTGTATTCATCCAGATGTTTTAGTTGCTATGCTATAAACTACACAATTCCACTTATTATTTTTCAATTAAAAATAATAAAGGTTATATCTTCATGAAGGAAAACAATGAGACTGATAAGGTTTCAATTACTAATGTCATCCTCTGGAGAAGACAGAATTGATAACTTATCAAGATGTGATGGGGTTTTCCCTAATTATCACTGATTTTTTTACAAGGATTAGGACTACAATCCACAGTTTTCATCAAAGCACACAACCAGAAGAGGTTTTTCTTTCTCAATACAAGGGTCTATCTACACCTCAATACTGCAGTATGTAATGCCCCAAAACAAAGATTTTTCTTTTACACAATAATAGTCACACTCAGTAGCTATTGTTCAAATAATAATACAGCCTAAATTTAAATTTTCACAATTTTTCTAGAATATTTTTATGGCTTTTTTCTCCTGCAGTTTACTATACAGGCAAGGAACAAGCATATAGTTCATTTATGTTGACCTTTTCACCTCCTGTAATCAAGGAAAGTTCCTTTCCTGGTTTGTTTCTTTTCAATCAGTTGACCTTTTTGAGACCAGCAGTCATTTAAAATGTTCCTCAGGCTGGTTTTGTATGACTGTTTTCTAGAGGCAGATTCCAGCTACAATTTTGGCAAGAAAACTACATAGGTGCTTTAAATATCCTGCTGAATCACATTGATGAGGTGGGAGCATGAAATGTCACATATGTCATTATTGGTCATGCTAAGTTCCCCACATAATAAGGTTGTATCCTCCAGATCTTACCATTGTAGGGGTTCTGCTTTTTATATGCAACTAGTAAAAATCTATGGGAGTGCATTAAGATTATCCGAAACTCCTGCTTCCAGAATCACACACCCAACGGTTCTAGCTTTAATTGATGATCCTTACCTGACCTGATGATCCTGACTTGAATTGTTGCAAAGTGATAATCTTTGTAATTTCATCATCTTTTCAGTGTTTTAAGCTAAAATTAATCTGTAGCATGGCAGTAATAAACACACAATAGTTTTTACTTCTTATTGCACTTGTGGTTGTCATCCCAGATGACATCATATTAAAATAGATTACATGTTTATTTACAAAAGTTCTATGAACAGATACTCTGGACATTTCAAGTGTCAACAGAGACTTCCATTTTAAACCATAATCTACATAATCAAAATACAAGATGTGTCAAATTTGAAGTGATGAAATAGAGCGGCAAATGAGGCCAGAAAAGGGCATCCAAACTTGATGATCTGGAGAACACATTCAGAAGGTTGCACACAAGTATCCAAGATGTAAGACTTCAAATGTGATTGGAAAGCTCTTTAGCAAGCTTCCACCACTGGCCTTAAGCTCATCCATGTAAATTACTGTGTCTGGCTGGACCTGAGTTTCCTCATCTATAGATCAACGTTATGGCGCTACGTGATGTCCACTACTTCTCCTCACTTCTGGACTTCTTTATAAATCAGATTATCTGTTTTGTTACTTCCAG
Seq C2 exon
GGCACAACCATAATGGCATTACTGACTTCCGTGCTACATGATGACAAAGAATTTCCTAATCCAAATATCTTTGACCCTGGCCACTTTCTAGATAAGAATGGCAACTTTAAGAAAAGTGACTACTTCATGCCTTTCTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000138115:ENST00000371270:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.098 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.5=100)
A:
NA
C2:
PF0006717=p450=FE(10.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development