RnoINT0044332 @ rn6
Intron Retention
Gene
ENSRNOG00000024016 | Cyp2c6v1
Description
cytochrome P450, family 2, subfamily C, polypeptide 6, variant 1 [Source:RGD Symbol;Acc:619934]
Coordinates
chr1:147811000-147812922:+
Coord C1 exon
chr1:147811000-147811187
Coord A exon
chr1:147811188-147812780
Coord C2 exon
chr1:147812781-147812922
Length
1593 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGC
5' ss Score
9.26
3' ss Seq
TCTTCTGTGTGTCATTACAGGGA
3' ss Score
8.99
Exon sequences
Seq C1 exon
CTAAAGTCCAGGAAGAGATTGATCGTGTGTTTGGCAAACATCGCAGCCCTTGCATGCAGGACAGGAGCCGCATGCCCTACACAGATGCCATGATTCATGAGGTCCAGAGGTTCATTGACCTCATTCCTACCAACCTGCCACATGCGGTGACCTGTGACATTAAGTTCAGGAACTACCTAATACCCATG
Seq A exon
GTAAGCTTTCCTTTTCTCTGCTGCACATCTGTGCTGTGTGCTCCAGTCTTCTCAGTCACACTTTACCTTTGATTCCTACATTTTTCTCCCCATTCTTTCACGGTGTTCCCTGAGGATTGAGGATATGATTGAATCCTTAACCCTTATTTTTTTCTTTTCCTTATTTCTCTATCCATGCTTAAACTTATCACTTCTATCATACTTGCCCTGTTCTTTGATAGTATACACATTCAATTATACCCCTTTATTACATATTTTTCCTTGAGTTTCCCATTGGGAATGGTATGTAGGTTTCTACATAACTTCTTACATACATCACATTTTGTTTAAGCCTTCATTTTTTTGCCAACTTTCCCTTTCATATAACTTTACTACCTCTTTAAATCCTGCCCCCAGTACTGTCCTTTCTACTTTCATTTAACATGTATTCTACTACCCCCATGCGTTTCCACTGACAATCACCTGCATTTAGCTATCTAGTCCCAACATATACCCTAAGTTAAAAAGCCTAAAACACACAAATATTTTAACCATGACTCTCAAGGTAGAGAAAATATGTAGCATTTGTATCTTTGAGCTGTATGACCTAAGTAAGTATACGTTTTTCTCATGAGTATGAGAAGTGTTCTCTTCTTTTGGGTAGGGTCATCCAAGCATTTCTGGATTTAACCAGTCTGGTTGTGATGAATAATGTTTTTGATATGAACTTTGTAAGGGTAAATTTTATTCACCTGATGAAGTTGTCATCTAGGTTTAATGCTAAATAAGCACATCCTTTCTTGTTCTTTTTGAACTCTGGTTGGCTGGTTTAACTCAGTTCTTTTGGCCCAAACTTCTCTCCAAGCTGACTGATTCAATCTGACTTCTCTCAGATTCTCACCCAATCAAACTAACTCTGGCAATCTATTCTAATCTTTTGACTCTTTATATTGTCTGAGTCATTCTGACTTTACTTGTGTCTAACTTGTTCTCCTTGAAACCTGTCTCTGTAAATCTGCCCCTGATAAAAACTGCTGCTGAACTCCACAAAATGAACTACCATGAACTCCACTCCTTTCTCCTGTCTTTTAGGTCACTGAACTAATGCAACTAATTAAATGGAACTCAGAGATTTATATGTCTCTGTCTCCTGAGTGCTGGGATTAAGGGTGTATGCTACCATTCCTGGACCTATGCTTTGGTTTAACTGAAACTTCCTCTATGCAATACTGGTCTTGAACTCAGAGGTTTGTTTGCCTTTGTCTCCTGGAATTTAAGGCATATCTGTATTATAGCCAGGTCACACAGATCTAAAAGGAGTTTGGATATGATCTCTTGCCCAAGCAGCCATGTTGCTTGCTTAAAATTCTGCTAGAGATGATGATTTCACTACTGAAGTACTGACCTAAAATTGATCTGAAGGCACTTTAGTAACATCACTGTCACAGTTCTCATACTCTTCCTATGCTTTCTCTGTCATAAATATACCTGATATTCTTTAAACTTAATCTTACCTATGGACCAGAAGATTGAACTATGTTATTTACTATTTTCCTTATAAGTCATGAATTTTTGTAACTTGCTTGTTTGTTACTCTTCTGTGTGTCATTACAG
Seq C2 exon
GGAACAACAATAATAACATCACTCTCATCAGTGCTGCATGACAGCAAGGAATTCCCCGACCCAGAGATATTTGACCCTGGCCACTTTTTAGATGGGAATGGAAAGTTTAAGAAAAGTGACTATTTCATGCCTTTCTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024016:ENSRNOT00000054742:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.5=100)
A:
NA
C2:
PF0006717=p450=FE(10.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCCAGGAAGAGATTGATCGTG
R:
CTGCTGAGAAAGGCATGAAATAGT
Band lengths:
326-1919
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]