MmuINT0044965 @ mm9
Intron Retention
Gene
NA
Description
NA
Coordinates
chr15:82470778-82471386:-
Coord C1 exon
chr15:82471215-82471386
Coord A exon
chr15:82470931-82471214
Coord C2 exon
chr15:82470778-82470930
Length
284 bp
Sequences
Splice sites
5' ss Seq
AAGGCAAAA
5' ss Score
0.62
3' ss Seq
ACACACATATGCACTTTCAGGTG
3' ss Score
7.99
Exon sequences
Seq C1 exon
CTTCAAAACCGCTATGGTGATGTGTTCAGCCTTCAGATGGCCTGGAAGCCCGTGGTTGTGATCAGCGGACTGAAGGCCGTGCGGGAAGTGCTGGTGACCTGTGGAGAGGACACAGCTGACCGCCCTGAAATGCCCATCTTTCAACACCTAGGCTATGGGGAAAAAGCTAAAG
Seq A exon
GCAAAATGCAGTGTGGGGGCAGAGATGGCATCAGAGCCAATTTGGGGGACACTGAGAAGAAGAAGATTAGGGCATGATGCAGGTGGTATTGAAGTTAAGAAATTCAAAAACAAAGTCCCTGAAATCCATTGTGGAGCCTCCTAAGCATGCTGGAGGGTGGTAGAGATATGTGTTGGGGGATGGGTGAGGTTATGGGGGCCACTGATCCCAGAGGAGAAGAAAAATGAAATGGGGAGAGGACAACACAGACAGGTATCCTTGGTTACACACATATGCACTTTCAG
Seq C2 exon
GTGTGGTCTTTGCACCTTACGGGCCTGAATGGCGAGAACTGAGGAGATTCTCTGTGTCAACCCTGCGCAACTTGGGCCTGGGCAAGAAATCGCTGGAGCAGTGGGTGACAGAGGAAGCTGGCCACCTCTGTGATGCCTTCACCGCCCAGGCTG
VastDB Features
Vast-tools module Information
Secondary ID
-Cyp2d13:NR_003552:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTTCAGCCTTCAGATGGC
R:
GAAGGCATCACAGAGGTGGC
Band lengths:
292-576
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: