GgaINT0117948 @ galGal4
Intron Retention
Gene
ENSGALG00000011894 | CYP2D6
Description
cytochrome P450 2D3-like [Source:RefSeq peptide;Acc:NP_001182486]
Coordinates
chr1:49266613-49267630:+
Coord C1 exon
chr1:49266613-49266784
Coord A exon
chr1:49266785-49267477
Coord C2 exon
chr1:49267478-49267630
Length
693 bp
Sequences
Splice sites
5' ss Seq
AAGGCAAGT
5' ss Score
3.24
3' ss Seq
TTGATCACTCTTATTTCCAGGGC
3' ss Score
8.07
Exon sequences
Seq C1 exon
TTTCGCAAGAAGTTTGGAAACATTTTCAGTCTCCAGAACTGCTGGACCAATGTGGTAGTGCTGAATGGGTACAAAACTGTGAAGGAAGCCCTGGTCAACAAATCAGAGGACTTTGCTGACCGGCCATACATGCCAGTATATGAACATCTGGGCTATGGACATAAATCTGAAG
Seq A exon
GCAAGTCCTTCGCAAAGGTACATTTCCTGCAGACACTAGCTCAAGGAGGACTGGGTAGATAATGAGTAGACGGAAGATTTTCGTGATGTAAAGCCAGCTTCTCATGTCCCTGTAGCCAATATCCTTGTACATCTGCCACTCTTCTGTGGTCACAGAATCAGGTGATCTACCAGCTCCAGTAAGTAGCTGTAGTACAGCTCCAGGCACTAGCACACACCTCTTCAGCAGTGTGAGAACACAATCAGTGGTACAACTTGCTTGCCAGGGTGAGAGCTGGTAGTTCTCTCTGCCCAGTGCCCATTGCCACCCAATGAGCATGTCCTTGTCATTACAAAAAGATGGCAACTTTCTTCCAAGAAAACAAAGCATCCCTCCCCATCAGATCCTCTGCACAAGCTGCTGCCCAGTTTGTACAAGCTCAGGACACAGTGCTGAATAATCTGGAGGAATGTTTCCTTCCTATGCTCTCCTTCAGTCCCCCCTTTTCCACCTTTGCTAGGTGCTTACCTGCATTAGAAGGCGCAGTACTAAGTTCTTAGAATGGCTGTTAGGAACAAGCCATACACAGTCTTACCCTTTTCTGTCTCTTTCCATGAATGTGAACCTCCAAACTCACATTAATTCTTTTCTAGCAAACCCTACTTGGTGTACACCTCAGAGCTCCTGATGTTTCTTGATCACTCTTATTTCCAG
Seq C2 exon
GGCTTGTTTTGGCAAGATATGGACATCTCTGGAAAGAGCTAAGGAAATTCACGCTCACTACCCTGAGGAATTTTGGGATGGGAAAGAAGTCCTTGGAAGAGCGAGTGACTGAGGAAGCAGGATTTTTGTGCTCTGCAATCAGTTCTGAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011894:ENSGALT00000019412:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.4=100)
A:
NA
C2:
PF0006717=p450=FE(11.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCAAGAAGTTTGGAAACATTTTCA
R:
CCTTCAGAACTGATTGCAGAGCA
Band lengths:
320-1013
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]