RnoINT0044350 @ rn6
Intron Retention
Gene
ENSRNOG00000032261 | Cyp2d4
Description
cytochrome P450, family 2, subfamily d, polypeptide 4 [Source:RGD Symbol;Acc:620640]
Coordinates
chr7:123601719-123602268:-
Coord C1 exon
chr7:123602097-123602268
Coord A exon
chr7:123601872-123602096
Coord C2 exon
chr7:123601719-123601871
Length
225 bp
Sequences
Splice sites
5' ss Seq
AAGGCAAAT
5' ss Score
1.13
3' ss Seq
GCCTAAGTGTGGTCCTCCAGGTG
3' ss Score
7.08
Exon sequences
Seq C1 exon
CTGAGATGTCGCTTTGGGGACCTGTTCAGCTTACAGCTGGCCTTTGAGTCGGTGGTTGTACTGAATGGGCTGCCAGCCCTGCGAGAGGCACTGGTGAAATACAGCGAGGACACCGCTGACCGGCCACCGCTGCATTTCAATGACCAGTCGGGCTTTGGACCACGCTCTCAAG
Seq A exon
GCAAATGCAGACAGTGGCAGGAGTGGTGGGGAAAGGGAGACTAGAGAGGGCTTGGGGACCAGAGGCAGTTTGGGACCTAGTTGAGGTGGAGGAGGGACAGGAACGGAGAAAAGACAAGGAAGGCAGACAGCTAACGGGTGAGCAAAGGGTCTGACAGTGGTGGCAGTGAAGTAGCATAGGGGCAGGAAAGAGGGCGAGGTCTCAGGCCTAAGTGTGGTCCTCCAG
Seq C2 exon
GTGTGGTCCTCGCGAGGTATGGACCTGCCTGGCGTCAGCAGCGGCGCTTCTCTGTGTCCACCTTCCGTCACTTTGGCCTGGGCAAGAAGTCACTGGAGCAGTGGGTGACAGAGGAGGCCAGATGCCTCTGTGCTGCCTTCGCTGACCATAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000032261:ENSRNOT00000011880:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.052 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.4=100)
A:
NA
C2:
PF0006717=p450=FE(11.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTACAGCTGGCCTTTGAGT
R:
CACTATGGTCAGCGAAGGCAG
Band lengths:
297-522
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]