DreINT0054263 @ danRer10
Intron Retention
Gene
ENSDARG00000042990 | cyp2p10
Description
cytochrome P450, family 2, subfamily P, polypeptide 10 [Source:ZFIN;Acc:ZDB-GENE-040120-1]
Coordinates
chr20:25688508-25688897:+
Coord C1 exon
chr20:25688508-25688673
Coord A exon
chr20:25688674-25688747
Coord C2 exon
chr20:25688748-25688897
Length
74 bp
Sequences
Splice sites
5' ss Seq
GAGGTTAGT
5' ss Score
7.15
3' ss Seq
AATGTCTGTTTTGTAAACAGGTT
3' ss Score
9.78
Exon sequences
Seq C1 exon
TTTGCAGAAAAATACGGCAAGATTTTTAGTTTTAGACTATTTGGATCAAGAATTGTAGTGTTGAATGGATATAACCTGGTGAAGGAAGTGTATACACAACAAGGTGACAACCTCGCTGATCGACCCACATTACCCATAACTTCTGCAATCATTGGAGACAATAGAG
Seq A exon
GTTAGTCTAATATCAGAACATTAAATTATCAAAATGTTAATCAATTACCTGTAAAATGTCTGTTTTGTAAACAG
Seq C2 exon
GTTTAGTGGCCTCCAGTGGATATAAATGGAAGCATCAGAGGAGATTTGCGCTCACGACACTTCGAAACTTCGGATTGGGAAAGAAAAACCTGGAGCTGTCCATTAATTTTGAATGTGGCTTTCTGAATGAGGCCATTTCAAATGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042990:ENSDART00000134047:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.0=100)
A:
NA
C2:
PF0006717=p450=FE(10.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGACCCACATTACCCATAACT
R:
GGCCTCATTCAGAAAGCCACA
Band lengths:
181-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]