MmuINT0044970 @ mm9
Intron Retention
Gene
NA
Description
NA
Coordinates
chr15:82468469-82469193:-
Coord C1 exon
chr15:82469005-82469193
Coord A exon
chr15:82468611-82469004
Coord C2 exon
chr15:82468469-82468610
Length
394 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
3' ss Seq
CACCATGTGCCTTCTGCCAGGGG
3' ss Score
7.46
Exon sequences
Seq C1 exon
GCCGAGTGCAAGAGGAAATCGACGAGGTCATAGGGCAGGTGCGGTGTCCAGAGATGGCAGACCAGGCCCACATGCCCTACACCAATGCTGTCATTCATGAGGTGCAGCGCTTTGCAGACATTGTCCCAATGAACTTGCCACACAAGACTTCTCATGATATTGGAAGTACAGGGCTTCCTTATCCCTAAG
Seq A exon
GTAGGCCTGGGACCCTCCAATGTCTAGTCAGGGTTGCTAGCTCTCTAATGTCTGAGCTGTCCACTTAAGATAGGACTGGAATTTAGGCTACCCAGTTCTCCATGCCACAGAACCAGCTTCCCCAGGTAACTATGGGAAGAGAAACAGTAGCAGGAACTGTATACTGGAAAGTCAAGTGGTAACAGCCACTACCTACAAATACAGGTGACAATGTGTATATCTGTCACTTATCACATATTCATGTCATAGTATTAATGACAGCTAAGAAGTCTCTAGGGCTAAGGTTATATGAAAGGATCCAGTCTGTGAGGTAGAGACCATGCATGTGAGCTTGGTGATCAGAGACTAGACAACCCCACCCCAGTCCAACCTCACACCATGTGCCTTCTGCCAG
Seq C2 exon
GGGACGACCCTCATCCCCAACCTGTCCTCCGCGCTAAAGGATGAGACTGTCTGGGAGAAGCCCCTCCGCTTCCATCCTGAACACTTCCTGGATGCCCAGGGCCATTTTGTGAAGCCTGAGGCCTTCATGCCATTCTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
-Cyp2d13:NR_003552:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGAGTGCAAGAGGAAATCGA
R:
TGCTGAGAATGGCATGAAGGC
Band lengths:
329-723
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: