MmuINT0044984 @ mm9
Intron Retention
Gene
ENSMUSG00000022445 | Cyp2d26
Description
cytochrome P450, family 2, subfamily d, polypeptide 26 [Source:MGI Symbol;Acc:MGI:1923529]
Coordinates
chr15:82622088-82623059:-
Coord C1 exon
chr15:82622899-82623059
Coord A exon
chr15:82622265-82622898
Coord C2 exon
chr15:82622088-82622264
Length
634 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGT
5' ss Score
9.81
3' ss Seq
CTGTTTTGTTTCTTTCACAGGTG
3' ss Score
12.7
Exon sequences
Seq C1 exon
AACATCCCTTCAATCCCAGCCCCCTCCTAAGTAAAGCTGTGAGCAACGTGATCGCCTCCCTCATTTATGCTCGTCGATTTGAGTATGAAGACCCTTTCTTCAACAGGATGCTCAAAACATTGAAGGAAAGCTTAGGAGAAGACACTGGCTTCGTCGGAGAG
Seq A exon
GTATGTGGCTCGGGGCAGTGGGCCTGGCCACTTCTATGCTATAAATTCTATCAGAGTAAGTATGAATTCAGGGTGGGTGGGCCTGGTGTGATGGCCAAGTGCAGGGAGAAAGGCTTGGGTGTTGACAAACCTCAGATAAGTGGAGGGGAGGAGCAGACCAAGGTTAATGGCTCTAGAAAGGGGGTGAGCCTGCAGGGAAACCACACAAGCCTGTTATATTTGAAGGGTAGAGTATTTCTTTTCTTCACCCTGAGCTACAGGAGAGCATGCAGGCTAGAACTGGGGAAGAAGCAGGTGATGGGTAGGGACAGATTCTGAGTCCATTGCGGAAGAGGCTGAGAACTGTGACTGGTCCAGGTAAACACTGAGCAGAAACAGCCCCCGGGGGCAAAAGAGCTAGATGGTCAGTGGGTAAATGAGCTTACCAAGCAAGCCTGGAGCCCTGAGCTGGATTCCTGAGTCCCATATAAGGGATAAAACTTACTCTATAAGTTGTTCTCTAATGACAAAACATGAGTCACTATATACAGGCAAGCACATGTGTGTACATGCATGTGCACACACACTGGCACACAAAATTATGAATTCTTAATTAGAAAGAAAAGCAACTGGACCTGTTTTGTTTCTTTCACAG
Seq C2 exon
GTGCTGAATGCCATCCCAATGCTACTACACATCCCTGGTTTGCCTGATAAAGCCTTCCCCAAGCTGAATTCATTCATAGCCTTAGTGAATAAGATGTTAATTGAGCACGACTCGACCTGGGATCCTGCACAGCCACCCCGAGATTTGACTGATGCCTTCCTGGCTGAGGTGGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022445-Cyp2d26:NM_029562:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.068
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.5=100)
A:
NA
C2:
PF0006717=p450=FE(12.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACATCCCTTCAATCCCAGCC
R:
AGGCATCAGTCAAATCTCGGG
Band lengths:
318-952
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: