DreINT0054276 @ danRer10
Intron Retention
Gene
ENSDARG00000042980 | cyp2p7
Description
cytochrome P450, family 2, subfamily P, polypeptide 7 [Source:ZFIN;Acc:ZDB-GENE-041001-155]
Coordinates
chr20:25672854-25673278:+
Coord C1 exon
chr20:25672854-25673014
Coord A exon
chr20:25673015-25673101
Coord C2 exon
chr20:25673102-25673278
Length
87 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
3' ss Seq
GTTTACCTGTTGTTCTTTAGCTT
3' ss Score
7.87
Exon sequences
Seq C1 exon
GTCGACCCTTTGACCCTCGCTTACTTCTGAACAACGCTGTCTCAAATGTGATCTGTGCGCTTGTGTTTAGTAATCGATTTGACTACAGTGACCATCATTTCCAGACTCTGTTAAAACACATCAATGAGGTCTTATATCTGGAAGGAACAGTCTGGGCTCAG
Seq A exon
GTAAATGTATTTTCAATATACAATACAGTGACTCACACAAACTGATGTTTTATACATGATATGCTAAGTTTACCTGTTGTTCTTTAG
Seq C2 exon
CTTTACAACTTTTTCCCATGGCTCATGCGACGACTGCCTGGACCCCACCAAAAAATATTTGTTCTGTTGAACAAAGTGATTGACTTTGTTAGAGAGAAGGTGAATGAACACAGAGTGGATTATGATCCTTCAAATCCTCGAGACTACATTGACTGCTTTCTAGCTGAGATGGAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042980:ENSDART00000063107:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.6=100)
A:
NA
C2:
PF0006717=p450=FE(12.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGATCTGTGCGCTTGTGTT
R:
TTTTTGGTGGGGTCCAGGCA
Band lengths:
169-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]