GgaINT0083452 @ galGal3
Intron Retention
Gene
ENSGALG00000022812 | E1BY32_CHICK
Description
NA
Coordinates
chr3:111598601-111600134:+
Coord C1 exon
chr3:111598601-111598761
Coord A exon
chr3:111598762-111599960
Coord C2 exon
chr3:111599961-111600134
Length
1199 bp
Sequences
Splice sites
5' ss Seq
ACGGTAATG
5' ss Score
6.53
3' ss Seq
AACAGCTTTCACTCTTGTAGATG
3' ss Score
7.92
Exon sequences
Seq C1 exon
GAAAACCCTTTGATGCTAGTAAAATAATTAATGCAGCAGTTGCTAACATAATTGTGTCAATATTACTTGGAAAACGATTTGACTACAAAGACTCCAGATTTATAAGGCTTCAACATCTGACCAATGAAAGCATGAGGCTTGCAGGGAAACCTTTGGTTACG
Seq A exon
GTAATGTTAAACATTTTTATGTTACTGTTCTATAGTGAAATTACACTGGTGGTCCATCGATGGTATTAAACAAAAAAGACTGAGATATTGAGAGTGATTACAGTCACTTTGGGACAAAACAAAGCTTGCAAGGCAATTCAGGTCATCATGAAGCCAACAACCAAACCCCTAATCTCATAAAATCTTAAATTATAGTTAAATGAGTGTTAAATCTGGACTGAAAAGATCAGATTGCCTTCTCCCTCCTTCCTTCCTTTTTCCTTTGTGATATTTCCTGTTTGCAGAGTATTGACATCAAACGGATGGGAGAAATAAAACAAAATGAAATAAAATAAAATAAAATGTAAAATGGAATTATAGAGGAATATATAGTAGTCAGTTTAATTTTCTGTGAGATAGCTTCCCCCCAAAATATGGCTCACACACATATGGTGACCTGCCCATAGAGTACACTCTCAGAACATGGCAAAGGGAGAAGCTATGGAGGATATGGTCTACCTTTAAAAGAAGCCTTGATACAGAACTTATTTTTCCGTGCTACTTGTATGTGGAAATGTCTCAATGAGTGATAAGCTCAGATAACTGTATGCAGTGCTGACACTCACCAGAATTGCTTCTCTCCCGTTAAGCTTCAAAACAGGAAAAATATTCAGCAGAAAAGCTGGTCTAGACAATAAAGTTGCAGGATAACACTTAAGTTAGCAGGTGCTCTTTTTCATTAAAAAAAAAAAAAACACAAAAAACAAAAAACTTGAAGTTTCGTGGTTTTTAGCCATTTGCAATCAGCAGTATAGATATCACTGTACACATCTGCACAATTCAATTTCCATTCTCCAGAGGGAAAGGGTTCACCATTCCACCGTTTATACCATTGCAACAGTGGCAAGAGACAGTTTTTTTATGCAAATTTCTTCCTTTCATTTTGTAATTATGCTCCATATATGTTTGTGTGGGGACACAGACTAAGATGTGTGGGAAATAACTGTAGTACTCCTTGAATTTTTGCTGTTTCCCTGTATTCATCTGTCCTTGGGGGATTTTCTATGGTGAATTTGTCCTGCCATGTTCTAAATAACAAAATATTAAAGCGAAGTCTCCGTTCTTTGCATCTGAAAAGGGGACATGATAGTATTCATTCGCTCCTGTAAAATGCATTTTGACTTTTGGCAGCTAACTGCTAACAGCTTTCACTCTTGTAG
Seq C2 exon
ATGTATAACATCTTCCCATACCTTGGATTCCTCCTGAGGGCCAACAAGACTCTTCTCAAAAACAGAGACGAATTCCATGCTTATGTAAAAGCTACTTTTCTAGAAAATCTCAAAACTCTGGACAAAAATGATCAAAGAAGTTTCATTGATGCTTTCCTTGTTAAACAGCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022812:ENSGALT00000026936:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.6=100)
A:
NA
C2:
PF0006717=p450=FE(12.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTTGCTAACATAATTGTGTCA
R:
CCTGCTGTTTAACAAGGAAAGCA
Band lengths:
298-1497
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]