GgaINT0083452 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BY32]
Coordinates
chr3:108412127-108413660:+
Coord C1 exon
chr3:108412127-108412287
Coord A exon
chr3:108412288-108413486
Coord C2 exon
chr3:108413487-108413660
Length
1199 bp
Sequences
Splice sites
5' ss Seq
ACGGTAATG
5' ss Score
6.53
3' ss Seq
AACAGCTTTCACTCTTGTAGATG
3' ss Score
7.92
Exon sequences
Seq C1 exon
GAAAACCCTTTGATGCTAGTAAAATAATTAATGCAGCAGTTGCTAACATAATTGTGTCAATATTACTTGGAAAACGATTTGACTACAAAGACTCCAGATTTATAAGGCTTCAACATCTGACCAATGAAAGCATGAGGCTTGCAGGGAAACCTTTGGTTACG
Seq A exon
GTAATGTTAAACATTTTTATGTTACTGTTCTATAGTGAAATTACACTGGTGGTCCATCGATGGTATTAAACAAAAAAGACTGAGATATTGAGAGTGATTACAGTCACTTTGGGACAAAACAAAGCTTGCAAGGCAATTCAGGTCATCATGAAGCCAACAACCAAACCCCTAATCTCATAAAATCTTAAATTATAGTTAAATGAGTGTTAAATCTGGACTGAAAAGATCAGATTGCCTTCTCCCTCCTTCCTTCCTTTTTCCTTTGTGATATTTCCTGTTTGCAGAGTATTGACATCAAACGGATGGGAGAAATAAAACAAAATGAAATAAAATAAAATAAAATGTAAAATGGAATTATAGAGGAATATATAGTAGTCAGTTTAATTTTCTGTGAGATAGCTTCCCCCCAAAATATGGCTCACACACATATGGTGACCTGCCCATAGAGTACACTCTCAGAACATGGCAAAGGGAGAAGCTATGGAGGATATGGTCTACCTTTAAAAGAAGCCTTGATACAGAACTTATTTTTCCGTGCTACTTGTATGTGGAAATGTCTCAATGAGTGATAAGCTCAGATAACTGTATGCAGTGCTGACACTCACCAGAATTGCTTCTCTCCCGTTAAGCTTCAAAACAGGAAAAATATTCAGCAGAAAAGCTGGTCTAGACAATAAAGTTGCAGGATAACACTTAAGTTAGCAGGTGCTCTTTTTCATTAAAAAAAAAAAAAACACAAAAAACAAAAAACTTGAAGTTTCGTGGTTTTTAGCCATTTGCAATCAGCAGTATAGATATCACTGTACACATCTGCACAATTCAATTTCCATTCTCCAGAGGGAAAGGGTTCACCATTCCACCGTTTATACCATTGCAACAGTGGCAAGAGACAGTTTTTTTATGCAAATTTCTTCCTTTCATTTTGTAATTATGCTCCATATATGTTTGTGTGGGGACACAGACTAAGATGTGTGGGAAATAACTGTAGTACTCCTTGAATTTTTGCTGTTTCCCTGTATTCATCTGTCCTTGGGGGATTTTCTATGGTGAATTTGTCCTGCCATGTTCTAAATAACAAAATATTAAAGCGAAGTCTCCGTTCTTTGCATCTGAAAAGGGGACATGATAGTATTCATTCGCTCCTGTAAAATGCATTTTGACTTTTGGCAGCTAACTGCTAACAGCTTTCACTCTTGTAG
Seq C2 exon
ATGTATAACATCTTCCCATACCTTGGATTCCTCCTGAGGGCCAACAAGACTCTTCTCAAAAACAGAGACGAATTCCATGCTTATGTAAAAGCTACTTTTCTAGAAAATCTCAAAACTCTGGACAAAAATGATCAAAGAAGTTTCATTGATGCTTTCCTTGTTAAACAGCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022812:ENSGALT00000026936:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.6=100)
A:
NA
C2:
PF0006717=p450=FE(12.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTTGCTAACATAATTGTGTCA
R:
CCTGCTGTTTAACAAGGAAAGCA
Band lengths:
298-1497
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]