BtaINT0046163 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003871 | CYP2B6
Description
cytochrome P450, family 2, subfamily B, polypeptide 6 [Source:HGNC Symbol;Acc:HGNC:2615]
Coordinates
chr18:50572105-50573895:-
Coord C1 exon
chr18:50573735-50573895
Coord A exon
chr18:50572282-50573734
Coord C2 exon
chr18:50572105-50572281
Length
1453 bp
Sequences
Splice sites
5' ss Seq
CAGGTCTGA
5' ss Score
5.06
3' ss Seq
CAGCCCTTTCTCTCCCGCAGCTG
3' ss Score
10.33
Exon sequences
Seq C1 exon
GAGCCCTCCAGGATCCCGTCTTCTACTTCCACTCCATCACCGCCAACATCATCTGCTCCATTGTCTTTGGAAAACGCTTTGACTACAGAGATCCTGAGTTCCTGAGGCTGCTGGAGTTGTTATTCCAATCTTTCGTGCTCATCAGCTCCCTGTCCAGCCAG
Seq A exon
GTCTGAGAGGGCAGAGCTCGAGTGGACATCCAGGCAGGGGAGAGGGGTGATTTGCTTTTGTGAACCGGAAATGCAGCTTCCAGCCAGAAGAGGGGCAAAGACAACACATAGAGAGAGAGAGAGAGACAGAGACACAGAGACCTGGGGGAAGGGAGAGATGGTGAGACAAGAACTGAGAGAGTAAGAGGAAGAAAAGGGAGTAATGGAGGAGGGAGAAACAGAAAGAGGAATCAAAGACACACACATGAACATGCTCCTCTTTTAAAACAAAATGATAAAGTTTGTCTTTCCCAATTAACCTAGAAATACCCCTATTGTGAAAAGTGAAAGTGTTAGTACCTCAGTCGTGTCTGACTCTGTGATCGCAAGGACTGTAGCCTGCCAGGCTCCTCTGTCCGTGCAGTTCTCCAGGCATGAATGCTGGAAGGGGTTGCATTTCCTCCTCCAGGGGATCTTCCCGACCCAGGGATCTAACCCAGACAGATTGTAGGCAGATTCTTTACCTTCTGGGCCACCAGGGAAGCCCCACCCCTATTGTATGTTAAGTTAAAAAGTGAAACTTCAGAAAAGTCTGCCTGGCTGTTGTTCTCAACCAAAAGTGCAGGTCAGAGTCACAGGAACGAATATCAAAAATACAAATTCCCATGACCTCCTAGTGGAGAGTCAGGCCTGGAAAATCTGGAAGGAGCTTCAGATGAGTACTTGCACAAGTCCAACATGGGGTTTCAATTTTCTCCTCTCACAGAGAACCACAGAGAGGGGAAAAGTCTGAAAGGAGATCTGCCGAACAGTTAACCATGTTATCTCTAGAAGGATAGGTGAAGGAGGAATTCCACATTATAATTTATACTATCCTGCATTTTTTGCAATTGTTGGCAACAAGTTAGATGTTACATTCTCGTTAGGCAAAGCAATAGACATATGCTCCCAAATAGTCAGCAGCTTCATTCTGTGTAAGCATCATGATATCAACGCCTGACACAGCAAGGATGATGCAACAGGTGGAAAGAGACAGAGAGAGGTTTGAGCAGAACAGATAAAATGGCTGGGGTAGGCAGGGACAGGCCAGAGGGTGGATGAGCAGGAGACCCATGGAGATGAGGAGAGGTGGAAAGGAGAGAGAGACAGGTGGGCGAGAGACTAACAAGAAGACACAAGGAGAGGGGGAAGGATGCAGAAAGAGAAAAATGTGATCTCTTACACAAAGGAGACACAGAAGCAGTGAGTGAGGGGCTCAGATACAGAGTAAGAGCCAGAGGGAGACAGAGGCTGAGAGGTGGAGAGAGAGACAGAGACAGGGAGACCAAGATACCCCAGAGAGGCAGAGAGAGATGGAGAGAGAGACAGGAAAACAGAGATCCTTGTGAAGGTACTGGGGGCCAGAAGGGCTGTCCCTCCCTGTGACTGGCTAGCTCAACCCGGCAAGGGCCTCACAGCCCTTTCTCTCCCGCAG
Seq C2 exon
CTGTTCGAGCTCTACTCCAGCTTCTTGAAGTACTTTCCTGGCTCACACAGGCAAATCTACAAAAACCTGCAGGAAATCAACGTCTTCATTGGCCGCAGTGTGGAGCAGCACCGTGAGACCCTCGACCCCAACGCCCCCCGGGATTTCATTGACTGCTACCTGCTCCGCATGGAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003871:ENSBTAT00000043951:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.7=100)
A:
NA
C2:
PF0006717=p450=FE(15.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCAGGATCCCGTCTTCTA
R:
AGGTAGCAGTCAATGAAATCCCG
Band lengths:
318-1771
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development