MmuINT0045050 @ mm9
Intron Retention
Gene
ENSMUSG00000081225 | Cyp2j12-ps
Description
cytochrome P450, family 2, subfamily j, polypeptide 12 [Source:MGI Symbol;Acc:MGI:3717097]
Coordinates
chr4:95773085-95779698:-
Coord C1 exon
chr4:95779557-95779698
Coord A exon
chr4:95773273-95779556
Coord C2 exon
chr4:95773085-95773272
Length
6284 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
AATCCCCTATTTTCTTGCAGAGA
3' ss Score
9.43
Exon sequences
Seq C1 exon
TACGGAGACAAGACTACTACAAGTTTCAATGAAGAAAACCTCATCAACAGCACCCTGGACCTCTTCTTTGCTGGATCAGAGACAACAACTAACACACTGCGCTGGGCTCTGCTCTACATAACTACAAACCCAGAAGTGCAAG
Seq A exon
GTGAGCATGTGCTGGGTGTGCCTAGACCAGGGAGAATAGTGTTTCTGAAATTTGTTGTTTAGATGGGCCAGAAGGTAGAATAGTGGAGTGGAAAGAAATGGAACAGCTTCCTTCTTTCATGTATCCATATAAGCTGTGATCAGAAGGTGTTGCCCAGATTTAAGACAGACCTTTGCCCCTCAAAAGATCTGGCTAAAGGGGGAAGGGGGACATCTTCCTACTTTCAATGATAAGAAAATCCTTCATGGTGTACCCAAAAACAAGTGTTCTTTTCATGTTAAAAGAACTAAAACAGAGAAATGTAAATTGAGTACTCTGTGCCATGTGCTGTAAGACGAGCTGTTTTGGAAAACGGGCATGGCCTTCACATGTCCTGTCAAGATTGTGATGAGTCATGGGTGCAGACTTTATAGTCTATGCTTTAAAGAATCTTCTGTTTTAGGGTCACATAGTGAAGTCAGCCGTTATAGTTTCCAGCAAAGACTGACAGTGTGCAATGAAAAATCCACTAAGTCCTTTCTTTCCAGCAGTGCCTTCTCATTTTGTCATGCATATCACCAAGATGCTTCAGTCTGATAACTGTCGTCCTATTAATGCTACCTCTGCTATCCAGACTCAACCACACACATTCTGCATGGTGCCTCTGAACATTACATTTTTCCCATTGGCATTGCCCTAATCTTGCCTCTACATACAATATTGGGCTTTCTATCTACCAAAAATGTACTATCCCAAATTCTTGAGCTTTCAGAAGAATTTTCTCAGATACTACCCCATAACATGTTTTAAAATTCGCTAAAAATTTACTGCCTAGTAAATTGCTTCCATGTTCTCCCTTGAGAGATTGCACAATGTGCCCCATTATGGGCCTTGCACATTGTTTATGACTCCATGGGAGTCTTCAGTCCTTCAGAAAATGGCCAATCCCGTCATTTTTATCTTTTTAGATTAAAAGAATAGTTTTTCACATGGGAGATAAGAATATTTTCATGCATGAAACATTTTTTTAATTTTGTTAATAGTTTATGAGAGAAGGATAAAGATACTATGTCACACTCAAGCCAAATATTTTTTCCTAAGATGAAAATAAGAGTAGTGATCACAATGTCTCCCATGTAGTAAACATCAAATAGTTATTTTTTCAACTCCATCCACTTTTTGAGACAGGGTCTTTCACTGCCTCAAACTCACCAAGTAGACAAGACTCTTTTGCCACTTGGCCATGGAAATCTACCTGTCTCTGCTTTACCTCAGTACACTGGGATTAGAAGTAGATGCCACCATACCTGTATTTTTTAAAAATGGATTCTAGATAGCAAACTCAGATCTTCATGTTTGCATAGCTATCACTTTGTTACTGAGCTTTCTTTCATGCCCAGCCTTTTTTTCTTTATTGATACAAAATGTTTATATTATTACATCTATATATGTTTATGTGTTTGTTACCTAGAATTCTGTTGCTGTGATATAATAGTATAACCAAACCAGTTTGTATATTTGAGAGTTTATTTTAAAAGGACAGAGTCTATAATTATTTAGGATGTATGGCAGTGAGTAACATGACCAAGAAGCTGAGATCTCACATTTCAACTGCAAACATAAAACAAAGAGAAAACTGGAAGTAGGACAAGTATAGAACCCTCAAAGCCATCCCCAGTGGCATACTTCATCCATCAAGGATCTACTTCTTAAAGGATCCATGGATTCCTAAACCACCTCCTAGGACTAAGTGTTTAAATACTAGAGCCAATACTTTACATTTCTCAATTAATCTTCTTCATTTGGGCCATTTTTCTTTATAGACTAGTGGCATGTTATGATAGAAAATGTATTTAGTCTAACTTAAAATTCCCTGTAGACTTTAGCTGTTCAAAAGTCCAAAGTTGTTTCAGACACTGAAGGCAATCTCTTAACTGTGACCCAATGTAAAAACCAAATGCAGATTTATAGACTTCCAGCATTCACTGGCAGGGAGTATACATTTTCATTCCTGAACAAAAGAATGGAGGTTTAGTGAGGAAACGCTTAAACAAAGAGAAATGAAATTCAAGAGGTCAAATGCCAAATACATGGAATTTAGTTTCATAGCACTAAGATGTCTCCACCCACGTGCCTTTGCTGCCTGCAACATAAACTCTCTCTAGGGATAGTTCCACTCCCTATGTGAAGTCTCCTTTGTAGGGTCTTAGGGGTGCACATCTCCAATATCTTAGGGATGCTACTGAACTCGGGCTTCACTTTCAGAACCCTATGCAGTGGCCTTTTATAGACTTCAAATGGGGACTCCACTGTTAGATGTTATCTTTCCTCAGTAGCTATCTGAACATCCAAGGAAGAATCATCACACCCGGCACTCTTGCATCTCCCAAACCTCTAAAGCACTGACATGTTCAGCTGCCCTACTGTGATAGCCTATTGCCCTCTGCATCACATTTGAAGTAGATTTTGTTTTCATGAAGGAGGTTTCCCTCCTTGTATCTTCTCCTTTTACAAATTGGAAGCTTAGCTGAGTGTTGTCTTACCCTCCATGAACCCTTCTCATGGTTCAGTGAAGAACAGTAGGCGTTTCTTTAATTGATCTCTTTAAAGATTACATAAGCCTCCAATTCAGCCTAGGCTTCAGGGACAACATTAAGCTTTTTAGTGCTTTTTTTTCCCTCAAAGCTGTATGTTTTTAACTTCATTTTGCCTACCTTGCTCTTTCAAATTGTAGAGCTAAAAGTTAGTAGCCATGCCAGAGACTCAATGTTATACTTTATTAAAATTTTCATTGACAAAAAAAAAATAGGCCATTACTTTTAAAATTAGCCTCCAGAAAGCTCTTAAGGCAATGGCACAAGGCCAGTGGATTCTTTGTCAAAGCATAAGCTGAATGGATTTACAGCTCAGTTGTTGCTCAAGCCCTCCCTACCCTCTGAAGCATCATGATCTAGAACTATATTACTGTATTTTATACTCCTACTAGAATGGCCCATTAAGCTCTGCTTACAAGGTTGATTTCTAAATTAATGTTGCAAAGTCCTTCACATCTCTCAAAAATAAATAAAATAAAGCCTAGCATGCCCAGGTTTCCCATAGCAGCAACCCCGTTTCTTTGTATCATTTTCTGTATTAGTTACTCTTATATGACTGGATAAAACTCCATGACCAAAAGCAGTTAACAAAAGGAAAAGATACTTTTGGTTTATGGTTCCAAGAAGAGATTCCATAAAGGTGGGGAAGGCTTGGCAGCTAATAGCCAGAGCAAGAAACTAAAAATAACATCTCAACTACATACAGGAAACAGAAAGCTATTCAAAACTGACACCAGTGATGAAATTCTTCCAGCAAAACTACACTTGCTAAAGGTTCTATAACCTCCACAAATAAGAATTGGAAGGAAGTGTTCAAATACCCGAAACTATGGGAAACATTTTTATTCAAACGTCTGCAATATGCATCATGCATTACAATTTAAAATGCATGTCTGCCTGAATATTTAAACTTTACAAATCATGCAAACCACCCTGGATCAGATTTGACTTCTGTAGCAAAGGCTCCAAAATGTCAATAGATTTACATGACATTTATTGTACCCATGTTTATTTTGCAACATGCACTGTAATTAAGAGATAGGACCAACCAGAGCCTTGATGGACTGTGAATGGATAAAGAGTGACATTCATGACCTAGAAACACAAATCAATCATGAGAAAAAGAAATTTTGATAAGTACTCTAGCATAGATGAGCTTTCAGGATACAATGCTAAGTAACCAACTGGAAGACTGTACAAACTGTCCTAAACCACTCAAAAAAGTTATCTAAAATAGTTAACTTCCTAAAGACAAAATGTGGAATGAGGGTAGGGAAATACTAAACATATGTAGTGGACATTAGACTTCAGTTCCAAACAATTCCTTAGCATTTACATATATAGCAATATGATCATACTTAATAATTATGATTTGTAGCCTTAAAATTGTTATGATGATCTGTGCTTGGTGGAAGACACATTTATCTATAATACTTGAGAGTCTGAGGCAGAAGTAGCACAAGCTTGAGGTTATTTGTCTACAAAGGAAGGCTCTACCTCAAAAACAAACCATGGCTATTATGGTAATATTTTGTTAGATGCATATCCCTAATTAAGTATTTATGGATGGTAGTGTACTGATGGATGTTTATTTGTCTCAAAGAAGGAAACTCTATAAACTATATCCAATAAAGGGCTTATTCCAAATTCCTTTCAACTTGTTACTGAGCTAAACAGGAAGTGAACTCCAAAACTCTCTAAACTGGATACCACAAGGACTGCCTTTGTATCCACAGGCAAAGAACAGAGGAAGGAAGCAGGGAGCCATCTTTTTCAGAAATTGACACAAAATAAAACATAATGTCTGTTTCCACATTACAGGGAAGAACTTAGTCACATGCTCACATTGACTCCAAAAAATTTAGAAATGACATTTTTTAGATGGACAACAGTAGAATCTCTGTCAAGATAGAAAATGGTGAAACTATAAAGAACAGGTCTGGCAGTTTTGACTCCTTGTTATGCTTATATTACTTCATGTAATTATCAAAACATTATTAAAATAAATCCTATTTACTCTTAGAAGTCAGAGGAGGAAACTGAGTCAGAAAGTATATAAGTAGTTTCAGCAACAATAATTGCAACAATGCTCACTAAGAGTTTGCAATGTATCTGCTACTCTGATAAATCTCCTTAGGAAATCACAGTCTGCAGTTATTCAGTAATTGAAATAATTCTGTGAAGTTCAATTACCAATGGAGTGGTGTTAGGAAGTAATTTGTCTTGTGAACTGCATTAGTGAGTTTTAAAGAGATATTAGACAGGCCAATGAGATTGTTGATTTCATGAAGGTACCGGGCTGCAGGCCCACCATCCTCAATTCAATCCCCAGAACCCAGATAGTACAAGAAGGAACTGAATCCTTCAAGTTTTCCTCTGAACTTCACCTTTTCCCTTTGGAACATGTACAAGTGCACACAAATAGAAAATAGAATATTTTAAAATATATTTAAAAGATAACAGAAACAAAAGTTATTGCCTTCTCCCTTAGAGAGTAGAACACAGCAAAACTGTCATCTAGAGACAGATTAATCAATATCACTAAAAAAAAAAAAAACTCACTTGACATCTTGATTGTAGATATCTGAGATTATCAAATTCTGAAAACTTGCCCCTTTTTTTGTATATAAAGAAGTAGGTGAAGTGAACTTATTTGCAGAAGCCTGATTGGCTACTGCTATGAGCTTACCCATGCTGATCACAGCTATTCAGTTCTGTGTAGGTTTAAAGCTGTGGCTATGTTGTAAGCACAAGGAAAATTAGAATTGACAGTTTTTCAAAACCTTTGAGAAGGTAAGAAATATGGTGTTTCTTTGTAAACAGAACACTGGGTGAAATGTAAGAAAATAACTCCAAAGTTTGTCTCTGTAACTCCTTCCATGGGTATTTTGTTCCCTATTCTAAGGAGGAATGAAGTATCTAAAGGTTGGTCTTCCTTCTTCTTGATTTTCTTGTGCTTTGCAAATTGTATGTTGTGTATTCTAAGTTTCTGGGCAAAAAGAAGGAAGACCAATGTGTGGATACTTCATTCCTCCTTAGAATAGGGAACAAAATGCCCATGGAAGGAGTTGCAGAGACAAAGTTTGGAGCTAACACAAAAGGATGGACCACCCAGAGACTACCCCACCCAGGGATCCATCCCATAATCAGCCACCAAACGCAGACACTATTGCACATGCCAGCAAGATTTTGCTGAAAGGACCCTGATATAGCTGTCTCGTGTGAGGCTATGCCAGTGCCTGGCAAATACAGAAGTGGATGCTCACAGTCAGCTATTGGATGGATCACAGGGCCCCCAATGGAGGAGCTAGAGAAAGTACCCAAGTAGCTAAAGGGCTCTGCAACTCTATAGGTGGAACAACAATATAAACTAACCAGTACCCCCAGAGCTCATGTCTCTAGCAGTATATGTAGCAGAAGATGGTCTAGTCGGCCATCATTGGGAAGAGAGGCCCCTTGGTCTTGCAAACTTTATATGCCCCTGTACAGCGGAATTCCAGGGCCAAGAAGCAGGAGTGGGTGGGTAGGGGAGCAGGGCAGGGATGGGGGGAGGGTATAGGGGACTTTCGGGATAGCATTTGAAATGTAAATGAAGAAAATATCTAATAAAAAATTGAAAAAAAGTAGAAAATAACACCTTGGAGACAACTTCTCTGTCTTCATTAGAAAGCACAAAACCTTGAAGCTAACAAATCCCCTATTTTCTTGCAG
Seq C2 exon
AGAAAGTACACTCTGAGATTGACAGGGTAATTGGACATGGAAGACAGCCAAGCACAGATGACCGAGACTCCATGCCCTACACCAATGCTGTCATCCATGAGGTGCTGAGGATGGGCAACATCCTCCCCATGAATGTTCCCAGGGAAGTAACAGCTGATAGCACACTGGCTGGATTCCACCTGCCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000081225-Cyp2j12-ps:NM_001100182:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.3=100)
A:
NA
C2:
PF0006717=p450=FE(13.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: