MmuINT0045063 @ mm9
Intron Retention
Gene
ENSMUSG00000052520 | Cyp2j5
Description
cytochrome P450, family 2, subfamily j, polypeptide 5 [Source:MGI Symbol;Acc:MGI:1270149]
Coordinates
chr4:96325283-96326321:-
Coord C1 exon
chr4:96326172-96326321
Coord A exon
chr4:96325444-96326171
Coord C2 exon
chr4:96325283-96325443
Length
728 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
3' ss Seq
TCTCCTTTCTCCACCTCCAGGTC
3' ss Score
12.97
Exon sequences
Seq C1 exon
GATTAGTCGTATCTAATGGCCAGACATGGAAGGAGCAAAGGAGGCTTGCCCTGATGGCACTGAGGAACTTTGGATTAGGAAAGAAGAGCTTGGAGGAGCGCATTCAGGAGGAGACCCATCACCTGGTGGAAGCCATAAGAGAGGAGGGAG
Seq A exon
GTAGGCATTTCAAAGGGCATGTCTAGGATGACATGAAGAGATTTTTTATTAGTTCCTAACTATTTTTCTGTTGTTCTGAGATAATACTTGACAAAATGAAATTAGTAAATGAAAAGTTTATGTTGAATAAAACTTTAAGTACCCTTAAAGTCCATTTTGGCAGGGAAGTTCTGGAGGTAGGAGCACAAAGTAGTGGGTCCCACTAAATATAGAATCAGTGCTCATAGAGAGTATTGATGTTAGTTCTCTTTCTCATTTTGATTTAATCTATGACCCTATGAGAAGTCACTGCCTGCATGTGAGTGATTTTTCCCTGCTTCAGATAAACTTTTCTGGAATAGCCCTCACAGATGCAGGAGTATGTTTCTATTGGTGATTCTAAGTCCAGACATGTTGCCAATAAAGTGAGCTATTATGGTATTTGTTCCAGGCTTTGCACTCGACTAGGATCAAATGGTGAACATCTTACCACAACTATGTCCTGTAGTGCTGCAGCTAAGCCATAAAAGAGATCAATAAACACATAGAATTTAACATCTGCCCATCTATCTGGCTTCTTAGACACTAGCAAAATCCTTGATAAATTCAGCCCCATGTAGGATTCTGTGGACACAGCTTCTTATATGCTTCTTTGTTATGTATGTTATAGATCACATAGAGTCAAATCTCTATAGAAAATAGAAACAAATAATTATGAAGAACACATTTTCTCCTTTCTCCACCTCCAG
Seq C2 exon
GTCAACCTTTTAATCCTCATTTGAAGCTCATCAATGCCGTTTCCAATATCATTTGCTCTGTCACCTTTGGGGAGCGCTTTGATTATGAGGACTGCCAGTTTCAGGAGCTGCTGCAGTTACTAGATGAGACCATGCATTTGATGGGTTCATCAGCAGGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052520-Cyp2j5:NM_010007:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.078 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.0=100)
A:
NA
C2:
PF0006717=p450=FE(11.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTAGTCGTATCTAATGGCCAGACA
R:
TTGGCCTGCTGATGAACCCAT
Band lengths:
310-1038
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: