MmuINT0045072 @ mm9
Intron Retention
Gene
ENSMUSG00000052914 | Cyp2j6
Description
cytochrome P450, family 2, subfamily j, polypeptide 6 [Source:MGI Symbol;Acc:MGI:1270148]
Coordinates
chr4:96198323-96202297:-
Coord C1 exon
chr4:96202137-96202297
Coord A exon
chr4:96198500-96202136
Coord C2 exon
chr4:96198323-96198499
Length
3637 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
3' ss Seq
ATCTTATTTTTCCTAACCAGCTG
3' ss Score
8.05
Exon sequences
Seq C1 exon
GAAAACCTTTCAACCCTCACTTCAGTATCAACAATGCAGTTTCCAATATCATTTGCTCTGTCACCTTTGGGGAGCGCTTTGACTACCATGACAGTAGATTTCAGGAGATGCTGAGGTTACTGGACGAGGTTATGTATTTGGAGACAACAATGATTAGTCAG
Seq A exon
GTAAACATTTTTCTTTGCATATCTTTGAAGGGTAGGGCTTGTAAAGCTAATGTATACTGTTTCAAATATATTTCAAATCCAATTCTTGACTACTATAAGAAACTTTATATATACAAAACATTTCTAACATTTATTTGAATAATTTTGATATTTATATTGGTCTATATACATACATATGTAACTGCTGGGCTCTTAGAAAAATGACAATTTTTACTTGGACTCTCTTTTCCGATGCCTCTATCTTCCTTTCTCAGAGTTATCTGAATTTACTTTCTAGCTCATTGCCTTGTTTTGTGATTTCTCTTTGTGCACTGATATTTGTTATTAGGAGACTAGCAGTGCACTCTCTGAATCTGTTATTGATTTCCCCTTGGTTAGGTAAGTGTGTTGTTCCTAGGCTTATGGCGTTATTAATAACAGTTCCATGTCAGTGTCCATGTGGCATACTCAATTTGTCTTATATTTGCATCTGGACATATAAGACAAAGATTCAGAAGTATGAACTCTTCCTATATCCCTTGATACTATCAGTCTTCTTATAATAGAAAATATAAACATTTGGTGTTCGAATGTCACTCCAAGTAGGCATCATTATGTATCTCTAATCCTTATCCCTCCTCAAATATTCTCCATAGCTTACTGGTCATTCATCCACTCCCGTGAATATGGAAAATAGTTGGACAGTTGTAAGGTGAAATTAGCCTCAAGTGCTTGATTTTATCAGCCTGGTTTCCCTTCTTCTAGTCCCCTATCTTGGTATGTACACGTTTGAGGATGTGTGTGTATATGTTTGTATGTTTCTAAAACATTTCCATGGTCTTTTATTTAGCTTGTGTGCACACATATATACATTTGCTATGTGTATGGGTGCACACAAGTCTGACAACAACGTTAAGAACTAGGTTCTTCCATCATGTGTGTACCATGTGTGAAAAAAAATCTGTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGATCATTTTTATTTACAACTGTTATGATTTATTAATTGGTGTTACCTTTAGGTAATATTAGTTTTTTTATCTCTTTTGACTAGTTTGAGTTTGAAATCTGTTTTATCAGCTATCAGAATAACTACATCAGCTTGCTCTATTTCTATTTGCCTTATAGACTGTTTTCTTGTGGGTATCTTTACCACTAAAATTTGCTTCTTTGAGATCACACAAATATTGATCTAGGTTTCAGCGTAGATAGTGACTCTGTTCTCTTAGACATTAGGGTCATGCTTATTATTTTACTTAACGGATATTTAAAAGGAGTGTGCCCTCAGCATTGTGCAACATTTCTGATAATTTTCTGCAGTTTAGTCTGCTAGTGATGTGTTCCAGTGTACATTTTTGACAAATTCAGTTATTATTTTTTTAAAAAAATTTTTATGTATTTACATCCTGCTCACTCCCCTCCTCCCATAATCCTTCCCCTCCCACTTCCCTTTCTCCTCTGAGTTAGTGGGGGGTCCCCAAGGTATCCCTACACCCTGGTCTATTGAGATTCTGAAAGCTTAGATGTGTCCTCTTCTACTGAGGGCAGACAAGTCAGTCCAGCTAGAAGAACATATCCCGTGTACAGGCAACAGCTTTTGAGATACCCCTGCTCCAATAGTTCAGGTCTCACATGAAGACCAAGATACACATCTGCTTCATGTTTTGTTTTATACAGACCTCAGTTCCCTTGCTGCATGTGTCTTCTGTTGCTGATCATTTCTACTACATTGCTGATTTTTTTCATTCATTTTGCTGACCTGTCCCTTTTTGTTGCTGACTTCCTATTGTGGGTCTTTTATTAAATTCAATTGTTTGCTTATCTCGCCAGAGTCACTTATCATTTTTCCTAGAGTCCTTTTGAGACTTTTGTATAGCATTATGTACTTGTGCTTCTGTATTACATTTATGCTTCCTTGAACATGTCTTCTGGAGTGTGGACATAACATTTGCAGGTGTTTCATATTGACCATACAGGGAATACACATGGTTCCAGAAAGAATGAATCAAAAGCATAGTTATTGGTCCATTAAAAGTTCATTTTCTCTTTAAGAACTTCTGTTTTTATACCATCAAATTCTCTACGATGCACCCAAGAGTGGGTTAATTCTCACTTGTGGTATCCCCACAAGCACTTTTTCCTTAAGTTCAGAGATTTGCTCACTGAAAATTAAGGAAATGGATAGCAAAACTTATAGGTATGAAACGGGGCATAAAGAATGAGCTCAGCTGCACTTAGTGTCTATACTGTCTTGTGTTCCTTGTTATAACTCTTATTCATATAGTTACAAGTCCAGCAGTTCCATGTTTTTCTCATCCTAGTCAGCAGGGGCTAGGAAGTCAGTGGAGATCAGAAGGTGTGCAGCCAACTTCTAGGTGTGTATTAGGGTAAAAAATAATCTCAGAAGGAAACATAAAGGTGGCAGAGTGAAAATAAATATTCTTGGAAAGATAGATTACAACAGTCATTTTGATAGATCACTTCAAAAGTCCATTAATTTTTACAATGCCCTTCTGCATAGGAAATGAGGCAACATGGTGTCAGCAAACTGGTAGAGCTGTGCAAGCAAATATAGATAGAAGTCCATCAGACCTCTATGGAATGCTTTGTATGTCTCTTGTTATTCACTGCTCTTGGATACAGGAAGACCCCATTAGCACATTGTATGTTATCAATTCTACTTTGTAATAATATTAACATCATTAATGTTGTTATTATAACTGTTACAACTTATTATTACTAGAGCCTAGAGAGGTAGAAATCACCCTCATATATGTCTTATTTTAAATCTTGTTGATTTATGTTTTGTTATGGTATCTGTTTAGTACAAATATTATTGAAACCTCATTCACCATTTAGTTTACTTGTGTAAAGGTTGCAGTTTTATATGTGGATCAAAGCACAGTACTGGTACCAGAATGTATAGTTACTTGCACAATACTTTTATTGATAATTTTCCATAAGGGAAATAAGTCATGACAGAGAACCAGAGGAGTGAGAAGTTGCTTGTCTCTTTAAGGATAATCAAGTAAACTATCTCCAAAGAGACTTGACCAATGCTTTATGAAGTGAGGGGCATGGTTAAGAAAAATCAGGGATACTGTTCAGGCACAATGAATATATGAACCAGGGCACTCAGTGTGTTCTCAAGGCTGATGTGGTTGGATTATTTAGAGAAATAATAAAGGTTTGGGGGTTGCCAATTCTGTAGGATGTGCACATGCCAAAGACATTGTCCAATTCTGAGTCTAGGGACAACCTTTTAATATAGAAACTAACAAAGTCAAGCATGTGATTACACTGATAAATATTTTTCCTGGAAATTATATGGTAAATAAGTTATAATGACATTGATAGTATAATAAATAAAAGTGTTGAGTTCTCTCCCAAAGTCCAGATAGAGAGGTGGTGTTATATAGCATGTAAAAGGCAGTTGGGCTTTAAGAAGTATTCGGAGGCTGAATATATTTTTCATGGTGGAGTTGAAATATTTTCAAGGAAGAGGAGAGGGAAAACTAAAGCTGGTCCCACAGTTTCACAGTAAGAAACATGTAGAAAGACAAGACTATATTAGGAAACACTGTAAAATACCACCATATTATCTTCATGACTATCTTATTTTTCCTAACCAG
Seq C2 exon
CTGTATAATATTTTTCCATGGATAATGAAATACATCCCTGGATCACATCAAAAAGTTTTCAGAAACTGGGAAAAACTGAAATTGTTTGTCTCTTGTATGATTGATGATCACCGGAAAGACTGGAACCCCGATGAACCAAGAGACTTCATTGATGCTTTCCTCAAGGAAATGACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052914-Cyp2j6:NM_010008:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.7=100)
A:
NA
C2:
PF0006717=p450=FE(12.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: