DreINT0054296 @ danRer10
Intron Retention
Gene
ENSDARG00000018485 | cyp2v1
Description
cytochrome P450, family 2, subfamily V, polypeptide 1 [Source:ZFIN;Acc:ZDB-GENE-040912-139]
Coordinates
chr20:25657113-25657559:+
Coord C1 exon
chr20:25657113-25657273
Coord A exon
chr20:25657274-25657382
Coord C2 exon
chr20:25657383-25657559
Length
109 bp
Sequences
Splice sites
5' ss Seq
CAGGTGACA
5' ss Score
5.49
3' ss Seq
CTTCTACTTGTCCATTATAGCTT
3' ss Score
8.53
Exon sequences
Seq C1 exon
GGCTGCCATTCAACCCTCATTACATCATTAACAATGGCGTCTCCAACATCATCTGCTCTATGGTGTTTGGAAGAAGGTTTGAATACACTGACCAGAGGTTTCTGAACATGCTCAGTCTGATTTCTAAAGCCCTTAAACTACAAACGTCTGTGTTTATACAG
Seq A exon
GTGACAAAGTGATCATTCCAATGATGAGTAGACACCCAATTACTAGTCAAAAATAAATGGATAAAAGACAGATGGCCACCTCAGCTGACCTTCTACTTGTCCATTATAG
Seq C2 exon
CTTTATGCTGCTTTTCCTCGTCTTATGGACCTCCTCCCAGGACCTCATAAAGAGCTGTTTTCCTGCTTCCACCAAGTTCGTGCTTTTATTAAGGAGGAGGTGGACAAACATCGTGCAGACTGGGACCCCTCTTCACCTAGAGATTTTATAGACTGCTATTTGACTGAAATAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000018485:ENSDART00000102913:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.6=100)
A:
NA
C2:
PF0006717=p450=FE(12.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTCTCCAACATCATCTGCT
R:
GTCCCAGTCTGCACGATGTTT
Band lengths:
251-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]