GgaINT1001529 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NT95]
Coordinates
chr8:25602832-25604326:-
Coord C1 exon
chr8:25604166-25604326
Coord A exon
chr8:25603009-25604165
Coord C2 exon
chr8:25602832-25603008
Length
1157 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAG
5' ss Score
8.68
3' ss Seq
ATCTCTCTTTCTTTCCAAAGCTG
3' ss Score
9.01
Exon sequences
Seq C1 exon
GAAATCCTTTCAACCCTCACCTTAAAGTCAATAATGCTGTTTCAAACATCATCTGCTCTGTCACCTTTGGCAACCGGTTTGAATATCATGATGAGGACTTCCAAAACTTGCTGCGGCTGATGAACGAGACTGCTATCCTCCAAGGGAAGATAATGAGTCAG
Seq A exon
GTACAGCCCTTATGCCCCCAGCACAGATAGCGTGCAGATTTGAAAGGCCATTGTTTCTTCTCTGTATTCAACTGCAAAAGCTCGAGCACTTTCTTAGATTCACAGATTATCTCAAGTTGGGAAAAATTCACTAGGGCCCTCAAGTCCACTTCCTGTCTCCACGCATAAATACTGAACATCCAAACCCTATGTCTTAGAGTGTTGCCCAAAGACTCCTTGATCTCGGTTAGATCAAGGCTGTACCCACTGTCCTAGGTGTCTGTTCCATGCTCACCGTTTCCTCTCACTTAGACTGACCTCCCCTCACACAGCTCCATGCCAGTCCCTTGGATCCTGTTGCTGTCACCAGAGAGCAGAGCTCAGCGCTGCCCCTCTGCTCTTTGCGACAAGGTGCAGGTTGCCATGAGGCTTCCTCTCTGCCTTTTCTATGGTGAACAAACCATGAGACTTCAGCACGCTTCATACATTTTGCTGTGTAAAGCCATCTTCATCTTCATAGCACTCCTTTAGAGCTCTCTGATAGCTTTATATCCTAATATATTGCAGCACACAAAACTACACAAGGTGAAGCCATCACCAAGCATAGGGGGCTGGCCAAGCCCAGGAGATGTTTTCCTCTGCTCTGGGACCATGAGATTCTCCTTGGTGCTTCCCACAGCTGTGTGGCACCACTCCATCACTGTATGCATGATAGTGAAGATGCAAGATGTGGTCCACCTGGATCACAAAGCTTGTCTATCCCTGGCTGGTTTTCCAGTGCTTTGGGAAGGAACTGAATGCAATAGAGATTTGGGGCTGGTCCATAGGAGAGATTATGAGAAGGATCATGAGCTAATGTGTAAGGGACATTTGTTGCCATTGCCCATTCCTTTCAAGCTTAGCACCCATAACTTTGGCAATGTTCACATTGCTCTCCTTCCCTCCTGCATCACCACTCCTGATCTCTGATTGCCAGGCTCCGTGCTGTGACTCTGCAGAACACACTAGTCACTCTCACCATGGAGGTATCAATCCTTTGTCATGCTGTTCTGGAGATAAGTTAATTCCATCAACTCCAGCAATGTAGGCTTGTGCCTTTGCAGGCTTTTCAAATTTTAAAAACGGAAGAGGTTTTGCAGTCCTTTCTTGCATTTGCTCATCTCTCTTTCTTTCCAAAG
Seq C2 exon
CTGTACAACTTTTTTCCGTCCGTAATAAAATACTTCCCTGGATCCCACCAAACCGTTATCAAAAACGGGAGGCTCATGAAAAGGTTTGTGTGCAAGAAGATCAGCAAACATAAGGAAGACCTGAGCCCCTCAGAGAGCCGGGACTTCATCGACAGCTACCTGCAGGAGATGGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010911:ENSGALT00000017750:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.7=100)
A:
NA
C2:
PF0006717=p450=FE(12.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAATCCTTTCAACCCTCACCT
R:
TTGGCCATCTCCTGCAGGTAG
Band lengths:
337-1494
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]