MmuINT0045081 @ mm9
Intron Retention
Gene
ENSMUSG00000081362 | Cyp2j7-ps
Description
cytochrome P450, family 2, subfamily j, polypeptide 7, pseudogene [Source:MGI Symbol;Acc:MGI:2449816]
Coordinates
chr4:95881979-95884272:-
Coord C1 exon
chr4:95884096-95884272
Coord A exon
chr4:95882121-95884095
Coord C2 exon
chr4:95881979-95882120
Length
1975 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAAG
5' ss Score
5.73
3' ss Seq
AGTACATAATGCCTTTCTAGTAC
3' ss Score
2.89
Exon sequences
Seq C1 exon
CTCTACAATGCCCTTCCTTCCATAATGAAATATCTTCCTGGACCACATCAAACAGTTTTCAGAAATTGGGAAAGACTGAAAATGATTGTTTACCATATGATGGAGAGTCACCGGAAAGATTGGAACCCTGATGAACCGAGAGACTTCATTGATGCTTTCCTTACAGAAATGACAAAG
Seq A exon
GTGAAGAAGATTCTGCCTGGGTGTTCTTAGAACAAATATGGTGGGTTAGTTACAAGTTTTCAGTGGACCTTACATCATGCTGTCATGTATTTAAGGGTATAACACTGTACTGATTCACTACTAGATAAATCCCTGTGTCTGTTGGCTATGCAAGCTTCTTCTGAGGATTATGGAAACTCCATCACAAAGATGCTACAAGCTCTCAAAGGGCACTAACATACTTTGGTATATCTTCTTTCTTTATCTTCAGTAGCAAGTATGTAGCATCTTTTGTCTCTCTTTATTTGCTTCCATCTTTACATCACTTTTCCATGATTCTTTTATTCAAGTACTCTACTAATTAGGATAACCCAAGCTAATCTTTCTTCTCTCAAGTGAATCACACTTGCAAGGTCAATTTTAGGTTATCAGCAACATGCAAAGTTTATAACATAAAGATGTGTGAGTCTTGTAGATTACTGGTTAACACACTATGAAAATATCAATTAGAACTAGTATTTTAGAAGTTAATTAAGCAGTATGTCAGAAATATCATTAAAAGGTAATGGTTTGCTACACTTTGGGTTCCTAAAATGCCAGATAATGAATCCCTTTGCCCCTCCTTGCCCTTTTCCCTTATATGAAGAAATTATACACAAAATAAAAATAGCAATTAATCTTCAGAACTCTAGCTAGATTAGTTAATCTAAGACTAGTTATGCACTTCATATCAGTCAACATTGAGTTTGATTGGATACTGGAGATTCATTCCAAAGTTTGGGTGGTGCCTCTGCCTTCCTCTATCCCACGATCATCACTCTCCAATCACATAAATGCTAGAAAGCAGTCAAGTGCATATATGTGTTACCTGTGCATCACTGTGACACTACTCAGCAAAAACAACTTGAGGGGCTTAAGATTTTGGTTCACAACTTCAGGGGTAGGTTTGACTGGTTCTCACACAGAAGGATTGGCAGATCATCTCAGCTTATGGTGTCAAAAATCAAGGGATGTAGTGGAGTCTGAACACCATCTTGTTCCAGGAAACAAGGAAGAACCCAGTGCTTTTACAACTTTGAGTATCTCCTGGTGACAGAGGAGTAGATAGCAGGAAATAGTCAAACTCAAGGCTGAACTGAGTCAATTAGAAACAAAAAGAACAATAAAGAATCAGAAAAAAAAACAGAAGCTGGTAGATGGAGAAAATCAGCAAGGTAGACAAACCCTTAGCCAAACTAACTGAAAAGGCAGAGAGACAGTATCCAAATAAACAAAATCAGAAAAGGAAAACATAACAACAGAAATTGAGGAAAATTAAAAAAAATATATATGTCTCACTTCAAAAGCATCCACTCTACAAATTGGAAAATCTAAATGAAGTGATTTTTCTAGACAGATACCACTCCCAAATCAAGACCAAGTAAACTATCAGAACAATTCTTTAATCCATTAGGGACTAAAAGCAGTCATTAAAAGTTAATTACACTGGACCTTTGGGAGCTCTCAGAGACTGAGCTACAATGTAAAAACTGTACACTGGCTAGACTGAGAGCCCCAACACATATGTAGCAGTTGTGCAGCTCAGCCATTATGTGTGTCCTTCAACAACTGGAATATGGACTATCACTAAAGCTGCTGCCTGTCTGTAGAATCTATTCCCTGACTGGGATGCCTTGTCTACCCTAAGTCAGGGAGGGTGCAGCTAACTCCATAGAGACCTGATGCTCCAGAGTAGGAGGATACTTAGGGAAGATGTCCTCCCGGTCAGAGGAGAAGGTGAGGGGATGAAAAGGGGGCTAAGTGAACAAATGTGAAGGGATGACTGGGAAGGGGGGTGTAGTGATTAGGATGAAAATGGAAAAAATTAATTAATTAATTAATTGATAGAAATATAAAATTAACTGGAGAACATGAACAAATAGAAAAATAAATAAATTATTTAATTAAGAAAATAATTAACAAATTAAATTTTTAAAAGTACATAATGCCTTTCTAG
Seq C2 exon
TACCCAGACAAAACTACTACAAGTTTCAATGAAGAAAACCTCATCTGCAGCTGTCTAGATCTCTTCATTGCTGGAACTGAGACATCATCCACAGCACTGCGCTGGGCACTGCTCTATATGACACTCAACCCGGAAGTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000081362-Cyp2j7-ps:NM_001104926:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.7=100)
A:
NA
C2:
PF0006717=p450=FE(10.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTACAATGCCCTTCCTTCCA
R:
CTTGCACTTCCGGGTTGAGTG
Band lengths:
319-2294
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: