MmuINT0045093 @ mm9
Intron Retention
Gene
ENSMUSG00000015224 | Cyp2j9
Description
cytochrome P450, family 2, subfamily j, polypeptide 9 [Source:MGI Symbol;Acc:MGI:1921769]
Coordinates
chr4:96252520-96258176:-
Coord C1 exon
chr4:96257827-96258176
Coord A exon
chr4:96252683-96257826
Coord C2 exon
chr4:96252520-96252682
Length
5144 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
ACTACTGTAATATTTTTCAGTTT
3' ss Score
7.56
Exon sequences
Seq C1 exon
CGACAGATTGGAGGGGCCCTGTAGCGATTTGGGGGTTTAAACCACAGGCCTGGTTCATTCTGGGAACTACAGGCAGTGTCCTTGGGGAACTGCCTCAGTTCAGATTCTCATTCCTCCAAGAGCCTGCTCTGATATCAGCCATGCTTGCGGCAGCCGGCTCCCTAGTGGCTGCCATTTGGGCTGCGCTCCATCTCCGGATTTTGCTGCTGTCTGCTGTCACCTTTCTGTTCCTGGCTGATTTCCTCAAAAACCGTCGCCCCAAGAACTACCCGCCAGGGCCAATGCGCCTTCCTTTCGTGGGTTGCTTGTTCCATTTGGACCCCAAGCAGCCCCACCTATCCCTTCAGCAG
Seq A exon
GTAGGAAGAGGCAACACTGCCTGGCTGCATCCTGAAACTGTATATTGCCATCAGGAACTCGAGGATGTAGCCGAAGGCTGTTGCTGACAGCCCACTAACCCAGAGATAAGGTCTTACAGGTTACAAACAGTTGTAGATTTTCTTGATATCTGTCGATGAAAGATTCCCAGAGTGATTTTATGGCCAGAAAACTTACTGTCTCTGATTTTAAAGTCTTTTAAGTATGTCAAGGTAGATTTGATGACGTAATAATTTATCCTCATAAACACGTTATGTTGGAGTAAGAAATAGGATGTCCCAGATGTTGGTTACACTACCTATCCAGTTTTGTTTTGTTTTGTTTTGAAAGTGTGTTCTCCTCTTGACCTGTGTACATATCAGTTCTCTGATTTGTCTTATTGAGCCTAGTTTGGTCCTTTTGCATCTTTGATGACTGCTCACCTACTGACTTTATCTAATCCAGAGAAAGATGCACTGAAGTTTCCAGCTCCACTAAAAGTCTGCCTGTTTTCCCACTGAGTTGTTGTAGCTCTCCCGCTTGTCCTGGAAAAATGGTTATGAGTACATAGTACCTGTATAGGACTGGAAGGTCTTTCTGCTCTATGACCCTCTTCCCACGTGATATTTCTTATCTACAGTAATTTTCTCTGTTTAGATAGTGAATACTCTGCCATGTGTGACCATCCCTGTCACTTTCCAGTATTTGTGAAGATTGGCTATGTCTGATTATTTATTGCTAATTTGAGGATTTAAACCCATATTTTTCCTTCTGTTCTCCCACCCATTTTTTTTTTAAATTCTGAGTTCTCTGTGTGTTTTTTAGACACTTTCCAAATACTTGCCTCTCTATTCCTCTTTGCTCTTTTCTTATATCTCCTGGATATCCTTGTATCATCCTCCCAGCAGCTGCTCAGTGTTTGTTATTCATTGCTCACATTCGACTGACTTTGTTAACACTATTTTTTCAGGGGAAGCAAAACAACTACAAAACTAGAGGACCCTATCCTCTCTCTATGGCCCAGCTGCCTAAGGTGTTTCCTCCACACACACTAAGAACTACACCAGACACTAACCTGCTCTTCAGTGTCCTGTGCAGCTGGAACTTAAAGGCGGAAAAGCCTCTTGTCTTTGCTCCTTACTCCTCTCCCATAGATTCATTGTTGTTTTGGTTTGTTTTGTTTTTGTTGTTGTTGTTGTTTGTTTTGGGTTTTTCGGTTTTTTTTTTTTTGACATTTCATGTTCAATTTTTTTTTTCTGACTTTCAGTACTTACTTTCCCTGTTTCTTCAGAGGTGGCTTTGGCAGAAGGAAATTTCTTAGCTTTACCCCACCTCAGAATGCCCCCCACTAATTCCCACACTGTCTTTCTCCTGATTGTGGACACTTGCTTGTCAATCTGCTGCTCTTAACAGATTTAGATGTCTCCCACTTAACTCTAGACTTTGTAGTTTCTGATGAGAAATAATTTCCAATTTCTTTCTAAGTGACATCCTCCCCCACCACCACCACCGGCCATCTACTTTCAATTGGTTTTGTTTGTTTTAACTTTCAATTTGATTATGATGTTTATTTGGTTTTTGATTCCTTTGCAGATTTTATGCACCTTTTACATAGATTTTTTTATGTTGCCAAATTGAGAAGTTTTAGCTATTCTTCACACATTTCATTGTCTATATCCCTCTCCACACAAATACGCACACATACTATTTTTCTGGAAAAGTTATTGCCTATATCTGCCTCCTGTTTTTCTGGGGCAACTGGATGTTGATGAATATTTTTATTTCATATACATATATATATATATACATATACATATATATAATCAATACTAATTAAAGAAGAAGAGGTCATGAATTTTAGAAAGAGGAATTAGGGATGACCCTGAAGGGGTTGGAAGGTAAAGAGAGAGGGGTGAAATTATTTCAATACATATTTGTGTATGAGATTCTAAAAATCAAAAATTTATATTTAAAAAATAAAACAAATTCAGATTATTAGCCCTTCTCCCCTCTGCTGATGGCAGGGTAAATTGGAACACTTTTTTCTCTCTTCTCTCTGTGTACCTCTGACACTTCTTAGGCTTAGGAACTTAAAGTCAGGGAAGTCTTTCAAGGTCACATTGCTTGGAATTTATGGCTCAATGCCGTGCCTCACTAATTCTAGGTGTCTTACTTTTGTTTATTTGGAACATTCACTCCTTGAATCTTGCAGCACTTGGGGAAAGAAGACATTATCTTTAGTACCTAGGTTTAGAACACTGGTTCTCAACCTTCCTTATGCCCTGATTCTATAACACAGTTTCTCATATTGTGGTGACCCCCAAGAATAACATTTTTTGGTTGCTATTTCATAATTGTTTTTGATGGGCTCAGGCAGCCACTATGAAAGGGGTCGTAGCTCACTGTCTTAGATTCTGTTTCTCCCTCAAGAATAAGCATACGATCCAGATGTGCACTCATTGCCAGTTAGGACCCCCTTAACTTAAACTAAAATTTCACTTATTCCTAGAACAGGCTTGTCAATATTATAAATGAGCCAATAAATCTTTTTTGAAAAGCTTAAAACACTCATGGACACATTCATGAAAACAGAGTTAAAAACTGATCTACATTTCTATGTGTACATTACTTACATCTAGAAGAAATGATAGTTACCGAATCTGTCCTTAGTAGAGACACTGGACAAGGCTTGTTAGAGGTGGAATGAACTTAAAACTGGACTTTTGGTTAAAAGTTAAAGAAAGGCTGCATATAGGCTCTATTGTAATTTGTATATAAGATTCCAAGATGAAACCAAAACATTACATTTATTTGAAATAGTTTATATAGGACTGGAGCTCTGTGACCAGTTCTATAGGGTGTGCATACACAAACATGATAAATGAGGATTGGACCCCTTCTGTTTGAAACCACTGTTGGAACTAGACATGACTCAGAAGAACAAGAGGCAGAAGTGGGGTCTTCAGAAACTCTTGAGTATACATGGGGAAGAAACGTTGATACTGCTCATACATAGTCATTCAGCTCAATTTTCACAGAGTGGCACATGCTGCATCATCATGGACATTCACTTCTTTGATTCTCTGGTTCCCTCTTCTTCTACCTGAACTCTCCATCTCTCACACTCATGCCTGCATCACTAAACTGTGAGGTCATTGTATATCTCAGGATCATGCCTTTTTCCTCACATCTTTCATAATGTTTGGGGATTCCCTCTGTCAGACAACAGCTTTGCCTCCTTGACTATACTACTTTACTTACAACTTGTTTGCCTTTTGGGAAGATAAAAAAATGTTCATTATGGTGAGGAGTTATGTAGTTGATATAATAAGACATAAGAAATGGCAACCCATTACAGAGTAAATACCATTCATGACAAGAGACTCACTGTTCTTTCCTTCTCTCTTTCTCTTTTTATTATTAGATTTTTTTCTTTATTTACATTTCAAATGTTATCCCCTTTCCTGATTTCCCCTCTGAAGAACCACTATCCCAACCCTCCTCCCCCTGCTCACCACCTCACCAACTCCTGCTTCCATGTCCTGGCATTTCTCTACACTGGGGCACTGAACCTTCACAGGACCAAGGGTTTCTCTTCCCATTGATGTCTGACAAGGCCATCCTCTGCTACATATGCAGCTGGAGTCATGGGCCCCTCCATGTGTATTCTTTGGTTGGTGATTTCATCCCTAGGAGCTTTGGGGATACTGGTTCATTCACATTGTTTCTCATATGGGGCTGCAAACCCCTTCAACTCCTGTGTCCTTTCTCTAGCTCCTTCATTGGGGACCCTGTGCTTAGTCCAATAGATGGCTGTGAGCATGCAGGACACATGCTCCACTATGTTCATAGCAGCCTAATATATAATAGCCAGAAGCTGGAAAGAACCCAGATGTCCCTCAACACAGGAATGAATACAGTGTGGTACATTTACACAATGGAGTACTACTCAGCTGTTCTTTTCTTCTCATCATCTTGATTTTTTTTCTCATCTTCACTCTTTGCAGATAGACCTTGCTAATTTCTCAATAATGTGTAGGGTGGCTGGGTCCTTAAAATGAGAAAACGGGGTGACTTGCCCATTTCTCCTTTCATTCTTCCTTACAGAATCCAATGTGAGAGGGATACTTATTTACCTTTAATAACTAGGTTCTAATTTAAAAAATAGAGAAACTCCCCCAAGAGTCCATAGACAGTGAAGCACAGAATCGTCATGCTCTTTTCACTCCAGAGGTACATGAAAGTCTCCAGCCCCAGCCTGTGATCCTTATTGCACTTTCCATATCTAACAGGGTATGAAGAGGGCCCAGTCTCTTCCGGTTAAACAGATAGTTTAATTTATTAATAATTCCATGTTTGCTACAGCAAACTTTAAAGTTATACTTTCATCTTTGGGCAGATTATGAACATAGCTCTCCGGCCTTTACTGGTCTCCAGGGATGCTTCAGAATAGAATGGTCTCATAACCTAGTCTAGGAACACATTAATGCTCATTTAATTCATATTGACTGAATACATGAATGAAAATTTTGGAGGAAATTCTTATAGTAGTGAGGAGAAGTGAAAAGTAGAGAAGAGAAAAAACTTTTCCATCACATCAAAATGCTACCACCACACACAAATGCACATACTTCACACAGAATTAGTTACATTAGTTATACAGGAGTCTTCTGTACATAACAGATGTTTGAGGGCATTATTCTCTGGCTAAACAGGGATGTTTACAAAACTACAGTAGATATACACATATCCACCTTCCTTGACCTTTGGGCTGTCAAATAAACTGTATTTTTGCCTTCACTAGAATTCAGGATACCTCAGGATAGAGAATTTGCTTATTTGTTGCTGCACATATCCTCATGCCTTCTCCTAGGGACATAAGGTAGCTGCACAGCTAATTCATTGGGATTTTCTACAGGGAAATTTGTATTCTTAATGTGTTTCAAAATTGAGCTTAATGCATTATGCGTAAAAATTTCTAAACATTTCTACAGAGGAAGATGCTTGCTTCCCTCTCCTCCCACACAGTCTTCACAGATACACACACACACATACACACACACACACACACACACACACACACACACACACACACACATACACACACGCACGCACGCGCAATTGTGACTACTGTAATATTTTTCAG
Seq C2 exon
TTTGTGAAGAAATACGGGAATGTTCTAAGCCTGGATTTTGCTAACATACCTTCAGTGGTTATAACTGGCATGCCCTTAATCAAAGAAATCTTTACTCAAATGGAGCACAATTTTATGAATCGCCCAGTCACTCTTCTCCGAAAACATCTCTTTAACAAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015224-Cyp2j9:NM_028979:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(5.7=37.1)
A:
NA
C2:
PF0006717=p450=FE(11.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: