MmuINT0045112 @ mm10
Intron Retention
Gene
ENSMUSG00000040703 | Cyp2s1
Description
cytochrome P450, family 2, subfamily s, polypeptide 1 [Source:MGI Symbol;Acc:MGI:1921384]
Coordinates
chr7:25802475-25804057:-
Coord C1 exon
chr7:25803916-25804057
Coord A exon
chr7:25803760-25803915
Coord C2 exon
chr7:25802475-25803759
Length
156 bp
Sequences
Splice sites
5' ss Seq
TAGGTATCT
5' ss Score
4.28
3' ss Seq
ACTCAGTCCTTCCCTGCCAGGTA
3' ss Score
7.73
Exon sequences
Seq C1 exon
GGCACTGAGGTCTTCCCTCTGATTGGCTCCATACTGCATGACCCTGCGGTTTTCCAGAACCCAGGAGAGTTCCATCCAGGCCGCTTCCTGGACGAAGATGGTCGGTTGAGAAAACACGAAGCCTTCCTGCCCTACTCCTTAG
Seq A exon
GTATCTACCGGGTTTTAGGGATAATTGGAAGGTGCTAATTGGCCAGTGGTGTGAGCTCCAGTTGAGGAGCACGTTCCTGCACCCCAGGGTCTCTGTCGGCTCCCCATATCTGTGGAGCCAGATGTGACCGCAGCTGACTCAGTCCTTCCCTGCCAG
Seq C2 exon
GTAAGCGAGTCTGCCTGGGAGAAGGCCTGGCTCGGGCGGAGTTGTGGCTTTTCTTCACTTCCATCTTGCAAGCCTTCTCCCTGGAGACCCCGTGCCCGCCGGGTGACCTGAGCCTGAAGCCAGCCATCAGTGGACTTTTCAACATCCCCCCGGACTTCCAGCTGCGGGTCTGGCCCACTGGCGACCAGTCCAGATGAAGGAAGGAGTTTGGAAGGTGGGAGCCCTCTGGGCTGAAAGAGCCTTACTCAGGGTGTGTGTGAAGCAGGTGTCTCAGAAGCAACATCACACTACACACCACGTATCAAGGCAGCTGTGGAGACCAGGGACCACACCACTACACAACCGCACAGCAACTGATGCATAGGCTTCTTTTTGGAGAGGGCTGTCTGAAACGGGGATCTTGTTATGTGGTGACACAAGCCGAACTCAAACTTGTGATCCTCCCGCCTCGGTGTCCTGCTCGCTGGAATTACAGGTATGCGCCACCATGAGCTGCATAGGCTTTCAGCCTACATCATGTAATATAGGCCATCTGGAATTGCAAGCATATAGCTAGATACCCCGCTGTCCACCACACGACTCTGTATGCTCACAACTCTAATCCAGCGACTGCCTACACAAACACACAAACAACCCAACCGTATTCAGGACTCTTAACTCTGTCTAACACGCTCAGCACCGCTGTTGCTGGGTCCCCGCCATAGAAAACAGCAAGCCCCAGCTGGGGTCATGTCACAGCCAGAACGATGTTCTGTCTACTCCCATGGATGACCTCACCACCATCCAGGCTCATGAGTGGCTCTATCAACGGCCACCAGCCAGTAATCCACACAGCCAAACCGTATGTGACAAGATCTTGGCCCTTCCAAACTTCTTCCCACTGAGGCACACCGTGACGACATACTATTCCCCAGTCACGTCCACACCCATGCCCCTCCAGCACGCTCCTTCCAACAAATGTTCCCAAATATAAAGGTTTCCTGGTCTGTGATTGTGCACACAGACCTTCTACAAATGAGGACCAGCGACCCAAAGAAAAAGGGTTTCCCAGTCATGTTATCAGGGGCCTGCTCTCAAACGCATTCTGATCTCTGAGCTGCCTGCAAGTCCTCATGAGAGTGCTGGAAATGTATCCTCCTCCTGGAAGGACTAACTGGCCTCACAGGGATGATGCAGGGGAGTGCTGTTAGCTGTTTCCAGCCCTCCTTATCAGGACAGAAGCCATAGCTGACCTCTTTGTGACTTGAAGGTTCCCGTTTTGCAATAAAAGTTTGTTTCTGGCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040703:ENSMUST00000043314:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.039 A=NA C2=0.008
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.2=100)
A:
NA
C2:
PF0006717=p450=PD(12.2=84.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCATACTGCATGACCCTGC
R:
AAAAGTCCACTGATGGCTGGC
Band lengths:
255-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types