MmuINT0045112 @ mm9
Intron Retention
Gene
ENSMUSG00000040703 | Cyp2s1
Description
cytochrome P450, family 2, subfamily s, polypeptide 1 [Source:MGI Symbol;Acc:MGI:1921384]
Coordinates
chr7:26587495-26589076:-
Coord C1 exon
chr7:26588935-26589076
Coord A exon
chr7:26588779-26588934
Coord C2 exon
chr7:26587495-26588778
Length
156 bp
Sequences
Splice sites
5' ss Seq
TAGGTATCT
5' ss Score
4.28
3' ss Seq
ACTCAGTCCTTCCCTGCCAGGTA
3' ss Score
7.73
Exon sequences
Seq C1 exon
GGCACTGAGGTCTTCCCTCTGATTGGCTCCATACTGCATGACCCTGCGGTTTTCCAGAACCCAGGAGAGTTCCATCCAGGCCGCTTCCTGGACGAAGATGGTCGGTTGAGAAAACACGAAGCCTTCCTGCCCTACTCCTTAG
Seq A exon
GTATCTACCGGGTTTTAGGGATAATTGGAAGGTGCTAATTGGCCAGTGGTGTGAGCTCCAGTTGAGGAGCACGTTCCTGCACCCCAGGGTCTCTGTCGGCTCCCCATATCTGTGGAGCCAGATGTGACCGCAGCTGACTCAGTCCTTCCCTGCCAG
Seq C2 exon
GTAAGCGAGTCTGCCTGGGAGAAGGCCTGGCTCGGGCGGAGTTGTGGCTTTTCTTCACTTCCATCTTGCAAGCCTTCTCCCTGGAGACCCCGTGCCCGCCGGGTGACCTGAGCCTGAAGCCAGCCATCAGTGGACTTTTCAACATCCCCCCGGACTTCCAGCTGCGGGTCTGGCCCACTGGCGACCAGTCCAGATGAAGGAAGGAGTTTGGAAGGTGGGAGCCCTCTGGGCTGAAAGAGCCTTACTCAGGGTGTGTGTGAAGCAGGTGTCTCAGAAGCAACATCACACTACACACCACGTATCAAGGCAGCTGTGGAGACCAGGGACCACACCACTACACAACCGCACAGCAACTGATGCATAGGCTTCTTTTTGGAGAGGGCTGTCTGAAACGGGGATCTTGTTATGTGGTGACACAAGCCGAACTCAAACTTGTGATCCTCCCGCCTCGGTGTCCTGCTCGCTGGAATTACAGGTATGCGCCACCATGAGCTGCATAGGCTTTCAGCCTACATCATGTAATATAGGCCATCTGGAATTGCAAGCATATAGCTAGATACCCCGCTGTCCACCACACGACTCTGTATGCTCACAACTCTAATCCAGCGACTGCCTACACAAACACACAAACAACCCAACCGTATTCAGGACTCTTAACTCTGTCTAACACGCTCAGCACCGCTGTTGCTGGGTCCCCGCCATAGAAAACAGCAAGCCCCAGCTGGGGTCATGTCACAGCCAGAACGATGTTCTGTCTACTCCCATGGATGACCTCACCACCATCCAGGCTCATGAGTGGCTCTATCAACGGCCACCAGCCAGTAATCCACACAGCCAAACCGTATGTGACAAGATCTTGGCCCTTCCAAACTTCTTCCCACTGAGGCACACCGTGACGACATACTATTCCCCAGTCACGTCCACACCCATGCCCCTCCAGCACGCTCCTTCCAACAAATGTTCCCAAATATAAAGGTTTCCTGGTCTGTGATTGTGCACACAGACCTTCTACAAATGAGGACCAGCGACCCAAAGAAAAAGGGTTTCCCAGTCATGTTATCAGGGGCCTGCTCTCAAACGCATTCTGATCTCTGAGCTGCCTGCAAGTCCTCATGAGAGTGCTGGAAATGTATCCTCCTCCTGGAAGGACTAACTGGCCTCACAGGGATGATGCAGGGGAGTGCTGTTAGCTGTTTCCAGCCCTCCTTATCAGGACAGAAGCCATAGCTGACCTCTTTGTGACTTGAAGGTTCCCGTTTTGCAATAAAAGTTTGTTTCTGGCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040703-Cyp2s1:NM_028775:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.039 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.2=100)
A:
NA
C2:
PF0006717=p450=PD(12.2=84.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCATACTGCATGACCCTGC
R:
AAAAGTCCACTGATGGCTGGC
Band lengths:
255-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: